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Further improve GSD performance. #1541

Merged
merged 10 commits into from May 1, 2023
Merged

Further improve GSD performance. #1541

merged 10 commits into from May 1, 2023

Commits on Apr 28, 2023

  1. Embed latest gsd implementation.

    @joaander
    joaander committed Apr 28, 2023
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  2. Add GSD.flush

    @joaander
    joaander committed Apr 28, 2023
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  3. Add necessary flush() calls to gsd unit tests.

    @joaander
    joaander committed Apr 28, 2023
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  4. Add maximum_write_buffer_size to GSD. 

    Also move initFileIO to the constructor. This prevents the need for
double caching of the buffer size prior to opening the file.
    @joaander
    joaander committed Apr 28, 2023
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  5. Flush on calls to GSD.write. 

    Ensure that we do not rely on Python's garbage collector to ensure
that the file is written after the call to write() ends.
    @joaander
    joaander committed Apr 28, 2023
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  6. Run pre-commit.

    @joaander
    joaander committed Apr 28, 2023
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  7. Scale index buffer size with write buffer size. 

    Also check for errors in new GSD API calls.
    @joaander
    joaander committed Apr 28, 2023
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  8. Install SIGTERM handler.

    @joaander
    joaander committed Apr 28, 2023
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  9. Sync gsd.c with gsd package.

    @joaander
    joaander committed Apr 28, 2023
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Commits on May 1, 2023

  1. Update migration guide.

    @joaander
    joaander committed May 1, 2023
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