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feat: Automated regeneration of healthcare v1beta1 client (#1399)
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This PR was generated using Autosynth. 🌈


<details><summary>Log from Synthtool</summary>

```
2020-11-05 02:38:10,377 synthtool [DEBUG] > Executing /home/kbuilder/.cache/synthtool/google-api-ruby-client/synth.py.
On branch autosynth-healthcare-v1beta1
nothing to commit, working tree clean
2020-11-05 02:38:10,408 synthtool [DEBUG] > Running: docker run --rm -v/home/kbuilder/.cache/synthtool/google-api-ruby-client:/workspace -v/var/run/docker.sock:/var/run/docker.sock -w /workspace --entrypoint script/synth.rb gcr.io/cloud-devrel-kokoro-resources/yoshi-ruby/autosynth healthcare v1beta1
DEBUG:synthtool:Running: docker run --rm -v/home/kbuilder/.cache/synthtool/google-api-ruby-client:/workspace -v/var/run/docker.sock:/var/run/docker.sock -w /workspace --entrypoint script/synth.rb gcr.io/cloud-devrel-kokoro-resources/yoshi-ruby/autosynth healthcare v1beta1
bundle install
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installing your bundle as root will break this application for all non-root
users on this machine.
The dependency jruby-openssl (>= 0) will be unused by any of the platforms Bundler is installing for. Bundler is installing for ruby but the dependency is only for java. To add those platforms to the bundle, run `bundle lock --add-platform java`.
Fetching gem metadata from https://rubygems.org/.........
Fetching gem metadata from https://rubygems.org/.
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Bundle complete! 31 Gemfile dependencies, 78 gems now installed.
Use `bundle info [gemname]` to see where a bundled gem is installed.
Post-install message from i18n:

HEADS UP! i18n 1.1 changed fallbacks to exclude default locale.
But that may break your application.

If you are upgrading your Rails application from an older version of Rails:

Please check your Rails app for 'config.i18n.fallbacks = true'.
If you're using I18n (>= 1.1.0) and Rails (< 5.2.2), this should be
'config.i18n.fallbacks = [I18n.default_locale]'.
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Post-install message from httparty:
When you HTTParty, you must party hard!
echo a | bundle exec bin/generate-api gen generated --api=healthcare.v1beta1 --names-out=/workspace/api_names_out.yaml
Loading healthcare, version v1beta1 from https://raw.githubusercontent.com/googleapis/discovery-artifact-manager/master/discoveries/healthcare.v1beta1.json
W, [2020-11-05T10:38:32.254841 #240]  WARN -- : Found reserved keyword 'end'
W, [2020-11-05T10:38:32.254908 #240]  WARN -- : Changed to 'end_'
W, [2020-11-05T10:38:32.265157 #240]  WARN -- : Found reserved property 'object_id'
W, [2020-11-05T10:38:32.265200 #240]  WARN -- : Changed to 'object_id_prop'
    conflict  google/apis/healthcare_v1beta1.rb
<lthcare_v1beta1.rb? (enter "h" for help) [Ynaqdhm] a
       force  google/apis/healthcare_v1beta1.rb
    conflict  google/apis/healthcare_v1beta1/service.rb
       force  google/apis/healthcare_v1beta1/service.rb
    conflict  google/apis/healthcare_v1beta1/classes.rb
       force  google/apis/healthcare_v1beta1/classes.rb
    conflict  google/apis/healthcare_v1beta1/representations.rb
       force  google/apis/healthcare_v1beta1/representations.rb
    conflict  /workspace/api_names_out.yaml
       force  /workspace/api_names_out.yaml
2020-11-05 02:38:36,857 synthtool [DEBUG] > Wrote metadata to generated/google/apis/healthcare_v1beta1/synth.metadata.
DEBUG:synthtool:Wrote metadata to generated/google/apis/healthcare_v1beta1/synth.metadata.

```
</details>

Full log will be available here:
https://source.cloud.google.com/results/invocations/749223e1-0b80-43a0-be68-640be14dbb8a/targets

- [ ] To automatically regenerate this PR, check this box.
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@yoshi-automation
yoshi-automation committed Nov 5, 2020
1 parent 79474e6 commit a809d40
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Showing 6 changed files with 471 additions and 4 deletions.
38 changes: 38 additions & 0 deletions api_names_out.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -109670,6 +109670,15 @@
"/healthcare:v1beta1/ActivateConsentRequest/consentArtifact": consent_artifact
"/healthcare:v1beta1/ActivateConsentRequest/expireTime": expire_time
"/healthcare:v1beta1/ActivateConsentRequest/ttl": ttl
"/healthcare:v1beta1/AnalyzeEntitiesRequest": analyze_entities_request
"/healthcare:v1beta1/AnalyzeEntitiesRequest/documentContent": document_content
"/healthcare:v1beta1/AnalyzeEntitiesResponse": analyze_entities_response
"/healthcare:v1beta1/AnalyzeEntitiesResponse/entities": entities
"/healthcare:v1beta1/AnalyzeEntitiesResponse/entities/entity": entity
"/healthcare:v1beta1/AnalyzeEntitiesResponse/entityMentions": entity_mentions
"/healthcare:v1beta1/AnalyzeEntitiesResponse/entityMentions/entity_mention": entity_mention
"/healthcare:v1beta1/AnalyzeEntitiesResponse/relationships": relationships
"/healthcare:v1beta1/AnalyzeEntitiesResponse/relationships/relationship": relationship
"/healthcare:v1beta1/Annotation": annotation
"/healthcare:v1beta1/Annotation/annotationSource": annotation_source
"/healthcare:v1beta1/Annotation/customData": custom_data
Expand Down Expand Up @@ -109820,6 +109829,25 @@
"/healthcare:v1beta1/DicomStore/streamConfigs": stream_configs
"/healthcare:v1beta1/DicomStore/streamConfigs/stream_config": stream_config
"/healthcare:v1beta1/Empty": empty
"/healthcare:v1beta1/Entity": entity
"/healthcare:v1beta1/Entity/entityId": entity_id
"/healthcare:v1beta1/Entity/preferredTerm": preferred_term
"/healthcare:v1beta1/Entity/vocabularyCodes": vocabulary_codes
"/healthcare:v1beta1/Entity/vocabularyCodes/vocabulary_code": vocabulary_code
"/healthcare:v1beta1/EntityMention": entity_mention
"/healthcare:v1beta1/EntityMention/certaintyAssessment": certainty_assessment
"/healthcare:v1beta1/EntityMention/confidence": confidence
"/healthcare:v1beta1/EntityMention/linkedEntities": linked_entities
"/healthcare:v1beta1/EntityMention/linkedEntities/linked_entity": linked_entity
"/healthcare:v1beta1/EntityMention/mentionId": mention_id
"/healthcare:v1beta1/EntityMention/subject": subject
"/healthcare:v1beta1/EntityMention/temporalAssessment": temporal_assessment
"/healthcare:v1beta1/EntityMention/text": text
"/healthcare:v1beta1/EntityMention/type": type
"/healthcare:v1beta1/EntityMentionRelationship": entity_mention_relationship
"/healthcare:v1beta1/EntityMentionRelationship/confidence": confidence
"/healthcare:v1beta1/EntityMentionRelationship/objectId": object_id_prop
"/healthcare:v1beta1/EntityMentionRelationship/subjectId": subject_id
"/healthcare:v1beta1/ErrorDetail": error_detail
"/healthcare:v1beta1/ErrorDetail/error": error
"/healthcare:v1beta1/ErrorDetail/resource": resource
Expand Down Expand Up @@ -109878,6 +109906,9 @@
"/healthcare:v1beta1/Expr/expression": expression
"/healthcare:v1beta1/Expr/location": location
"/healthcare:v1beta1/Expr/title": title
"/healthcare:v1beta1/Feature": feature
"/healthcare:v1beta1/Feature/confidence": confidence
"/healthcare:v1beta1/Feature/value": value
"/healthcare:v1beta1/FhirConfig": fhir_config
"/healthcare:v1beta1/FhirConfig/fieldMetadataList": field_metadata_list
"/healthcare:v1beta1/FhirConfig/fieldMetadataList/field_metadata_list": field_metadata_list
Expand Down Expand Up @@ -110061,6 +110092,8 @@
"/healthcare:v1beta1/IngestMessageResponse": ingest_message_response
"/healthcare:v1beta1/IngestMessageResponse/hl7Ack": hl7_ack
"/healthcare:v1beta1/IngestMessageResponse/message": message
"/healthcare:v1beta1/LinkedEntity": linked_entity
"/healthcare:v1beta1/LinkedEntity/entityId": entity_id
"/healthcare:v1beta1/ListAnnotationStoresResponse": list_annotation_stores_response
"/healthcare:v1beta1/ListAnnotationStoresResponse/annotationStores": annotation_stores
"/healthcare:v1beta1/ListAnnotationStoresResponse/annotationStores/annotation_store": annotation_store
Expand Down Expand Up @@ -110271,6 +110304,9 @@
"/healthcare:v1beta1/TextConfig": text_config
"/healthcare:v1beta1/TextConfig/transformations": transformations
"/healthcare:v1beta1/TextConfig/transformations/transformation": transformation
"/healthcare:v1beta1/TextSpan": text_span
"/healthcare:v1beta1/TextSpan/beginOffset": begin_offset
"/healthcare:v1beta1/TextSpan/content": content
"/healthcare:v1beta1/Type": type
"/healthcare:v1beta1/Type/fields": fields
"/healthcare:v1beta1/Type/fields/field": field
Expand Down Expand Up @@ -110699,6 +110735,8 @@
"/healthcare:v1beta1/healthcare.projects.locations.list/name": name
"/healthcare:v1beta1/healthcare.projects.locations.list/pageSize": page_size
"/healthcare:v1beta1/healthcare.projects.locations.list/pageToken": page_token
"/healthcare:v1beta1/healthcare.projects.locations.services.nlp.analyzeEntities": analyze_nlp_entities
"/healthcare:v1beta1/healthcare.projects.locations.services.nlp.analyzeEntities/nlpService": nlp_service
"/healthcare:v1beta1/key": key
"/healthcare:v1beta1/quotaUser": quota_user
"/homegraph:v1/AgentDeviceId": agent_device_id
Expand Down
2 changes: 1 addition & 1 deletion generated/google/apis/healthcare_v1beta1.rb
View file
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ module Apis
# @see https://cloud.google.com/healthcare
module HealthcareV1beta1
VERSION = 'V1beta1'
REVISION = '20201013'
REVISION = '20201028'

# View and manage your data across Google Cloud Platform services
AUTH_CLOUD_PLATFORM = 'https://www.googleapis.com/auth/cloud-platform'
Expand Down
266 changes: 266 additions & 0 deletions generated/google/apis/healthcare_v1beta1/classes.rb
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Original file line number Diff line number Diff line change
Expand Up @@ -59,6 +59,59 @@ def update!(**args)
end
end

# The request to analyze healthcare entities in a document.
class AnalyzeEntitiesRequest
include Google::Apis::Core::Hashable

# document_content is a document to be annotated.
# Corresponds to the JSON property `documentContent`
# @return [String]
attr_accessor :document_content

def initialize(**args)
update!(**args)
end

# Update properties of this object
def update!(**args)
@document_content = args[:document_content] if args.key?(:document_content)
end
end

# Includes recognized entity mentions and relationships between them.
class AnalyzeEntitiesResponse
include Google::Apis::Core::Hashable

# The union of all the candidate entities that the entity_mentions in this
# response could link to. These are UMLS concepts or normalized mention content.
# Corresponds to the JSON property `entities`
# @return [Array<Google::Apis::HealthcareV1beta1::Entity>]
attr_accessor :entities

# entity_mentions contains all the annotated medical entities that were were
# mentioned in the provided document.
# Corresponds to the JSON property `entityMentions`
# @return [Array<Google::Apis::HealthcareV1beta1::EntityMention>]
attr_accessor :entity_mentions

# relationships contains all the binary relationships that were identified
# between entity mentions within the provided document.
# Corresponds to the JSON property `relationships`
# @return [Array<Google::Apis::HealthcareV1beta1::EntityMentionRelationship>]
attr_accessor :relationships

def initialize(**args)
update!(**args)
end

# Update properties of this object
def update!(**args)
@entities = args[:entities] if args.key?(:entities)
@entity_mentions = args[:entity_mentions] if args.key?(:entity_mentions)
@relationships = args[:relationships] if args.key?(:relationships)
end
end

# An annotation record.
class Annotation
include Google::Apis::Core::Hashable
Expand Down Expand Up @@ -1241,6 +1294,145 @@ def update!(**args)
end
end

# The candidate entities that an entity mention could link to.
class Entity
include Google::Apis::Core::Hashable

# entity_id is a first class field entity_id uniquely identifies this concept
# and its meta-vocabulary. For example, "UMLS/C0000970".
# Corresponds to the JSON property `entityId`
# @return [String]
attr_accessor :entity_id

# preferred_term is the preferred term for this concept. For example, "
# Acetaminophen". For ad hoc entities formed by normalization, this is the most
# popular unnormalized string.
# Corresponds to the JSON property `preferredTerm`
# @return [String]
attr_accessor :preferred_term

# Vocabulary codes are first-class fields and differentiated from the concept
# unique identifier (entity_id). vocabulary_codes contains the representation of
# this concept in particular vocabularies, such as ICD-10, SNOMED-CT and RxNORM.
# These are prefixed by the name of the vocabulary, followed by the unique code
# within that vocabulary. For example, "RXNORM/A10334543".
# Corresponds to the JSON property `vocabularyCodes`
# @return [Array<String>]
attr_accessor :vocabulary_codes

def initialize(**args)
update!(**args)
end

# Update properties of this object
def update!(**args)
@entity_id = args[:entity_id] if args.key?(:entity_id)
@preferred_term = args[:preferred_term] if args.key?(:preferred_term)
@vocabulary_codes = args[:vocabulary_codes] if args.key?(:vocabulary_codes)
end
end

# An entity mention in the document.
class EntityMention
include Google::Apis::Core::Hashable

# A feature of an entity mention.
# Corresponds to the JSON property `certaintyAssessment`
# @return [Google::Apis::HealthcareV1beta1::Feature]
attr_accessor :certainty_assessment

# The model's confidence in this entity mention annotation. A number between 0
# and 1.
# Corresponds to the JSON property `confidence`
# @return [Float]
attr_accessor :confidence

# linked_entities are candidate ontological concepts that this entity mention
# may refer to. They are sorted by decreasing confidence.it
# Corresponds to the JSON property `linkedEntities`
# @return [Array<Google::Apis::HealthcareV1beta1::LinkedEntity>]
attr_accessor :linked_entities

# mention_id uniquely identifies each entity mention in a single response.
# Corresponds to the JSON property `mentionId`
# @return [String]
attr_accessor :mention_id

# A feature of an entity mention.
# Corresponds to the JSON property `subject`
# @return [Google::Apis::HealthcareV1beta1::Feature]
attr_accessor :subject

# A feature of an entity mention.
# Corresponds to the JSON property `temporalAssessment`
# @return [Google::Apis::HealthcareV1beta1::Feature]
attr_accessor :temporal_assessment

# A span of text in the provided document.
# Corresponds to the JSON property `text`
# @return [Google::Apis::HealthcareV1beta1::TextSpan]
attr_accessor :text

# The semantic type of the entity: UNKNOWN_ENTITY_TYPE, ALONE,
# ANATOMICAL_STRUCTURE, ASSISTED_LIVING, BF_RESULT, BM_RESULT, BM_UNIT, BM_VALUE,
# BODY_FUNCTION, BODY_MEASUREMENT, COMPLIANT, DOESNOT_FOLLOWUP, FAMILY,
# FOLLOWSUP, LABORATORY_DATA, LAB_RESULT, LAB_UNIT, LAB_VALUE, MEDICAL_DEVICE,
# MEDICINE, MED_DOSE, MED_DURATION, MED_FORM, MED_FREQUENCY, MED_ROUTE,
# MED_STATUS, MED_STRENGTH, MED_TOTALDOSE, MED_UNIT, NON_COMPLIANT,
# OTHER_LIVINGSTATUS, PROBLEM, PROCEDURE, PROCEDURE_RESULT, PROC_METHOD,
# REASON_FOR_NONCOMPLIANCE, SEVERITY, SUBSTANCE_ABUSE, UNCLEAR_FOLLOWUP.
# Corresponds to the JSON property `type`
# @return [String]
attr_accessor :type

def initialize(**args)
update!(**args)
end

# Update properties of this object
def update!(**args)
@certainty_assessment = args[:certainty_assessment] if args.key?(:certainty_assessment)
@confidence = args[:confidence] if args.key?(:confidence)
@linked_entities = args[:linked_entities] if args.key?(:linked_entities)
@mention_id = args[:mention_id] if args.key?(:mention_id)
@subject = args[:subject] if args.key?(:subject)
@temporal_assessment = args[:temporal_assessment] if args.key?(:temporal_assessment)
@text = args[:text] if args.key?(:text)
@type = args[:type] if args.key?(:type)
end
end

# Defines directed relationship from one entity mention to another.
class EntityMentionRelationship
include Google::Apis::Core::Hashable

# The model's confidence in this annotation. A number between 0 and 1.
# Corresponds to the JSON property `confidence`
# @return [Float]
attr_accessor :confidence

# object_id is the id of the object entity mention.
# Corresponds to the JSON property `objectId`
# @return [String]
attr_accessor :object_id_prop

# subject_id is the id of the subject entity mention.
# Corresponds to the JSON property `subjectId`
# @return [String]
attr_accessor :subject_id

def initialize(**args)
update!(**args)
end

# Update properties of this object
def update!(**args)
@confidence = args[:confidence] if args.key?(:confidence)
@object_id_prop = args[:object_id_prop] if args.key?(:object_id_prop)
@subject_id = args[:subject_id] if args.key?(:subject_id)
end
end

# Structure to describe the error encountered during batch operation on one
# resource. This is used both for sample errors in operation response, and for
# format of errors in error reports.
Expand Down Expand Up @@ -1629,6 +1821,32 @@ def update!(**args)
end
end

# A feature of an entity mention.
class Feature
include Google::Apis::Core::Hashable

# The model's confidence in this feature annotation. A number between 0 and 1.
# Corresponds to the JSON property `confidence`
# @return [Float]
attr_accessor :confidence

# The value of this feature annotation. Its range depends on the type of the
# feature.
# Corresponds to the JSON property `value`
# @return [String]
attr_accessor :value

def initialize(**args)
update!(**args)
end

# Update properties of this object
def update!(**args)
@confidence = args[:confidence] if args.key?(:confidence)
@value = args[:value] if args.key?(:value)
end
end

# Specifies how to handle de-identification of a FHIR store.
class FhirConfig
include Google::Apis::Core::Hashable
Expand Down Expand Up @@ -3202,6 +3420,29 @@ def update!(**args)
end
end

# EntityMentions can be linked to multiple entities using a LinkedEntity message
# lets us add other fields, e.g. confidence.
class LinkedEntity
include Google::Apis::Core::Hashable

# entity_id is a concept unique identifier. These are prefixed by a string that
# identifies the entity coding system, followed by the unique identifier within
# that system. For example, "UMLS/C0000970". This also supports ad hoc entities,
# which are formed by normalizing entity mention content.
# Corresponds to the JSON property `entityId`
# @return [String]
attr_accessor :entity_id

def initialize(**args)
update!(**args)
end

# Update properties of this object
def update!(**args)
@entity_id = args[:entity_id] if args.key?(:entity_id)
end
end

# Lists the Annotation stores in the given dataset.
class ListAnnotationStoresResponse
include Google::Apis::Core::Hashable
Expand Down Expand Up @@ -4784,6 +5025,31 @@ def update!(**args)
end
end

# A span of text in the provided document.
class TextSpan
include Google::Apis::Core::Hashable

# The unicode codepoint index of the beginning of this span.
# Corresponds to the JSON property `beginOffset`
# @return [Fixnum]
attr_accessor :begin_offset

# The original text contained in this span.
# Corresponds to the JSON property `content`
# @return [String]
attr_accessor :content

def initialize(**args)
update!(**args)
end

# Update properties of this object
def update!(**args)
@begin_offset = args[:begin_offset] if args.key?(:begin_offset)
@content = args[:content] if args.key?(:content)
end
end

# A type definition for some HL7v2 type (incl. Segments and Datatypes).
class Type
include Google::Apis::Core::Hashable
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