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Fixes #457
Use guava Base64 handling until we drop Java 7 support and can use the built-in classes.
Use Java 7 charset handling for StringUtils.
By removing commons-codec, we should no longer need to jarjar a shaded version of commons-codec (and guava). We can also remove the antrun plugin which scrubbed the shaded commons-codec. This will also unblock the windows tests in #562 (file permissions errors during antrun plugin) Edit: it unblocked it, but there are more failures.