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pom.xml
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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<name>Google Genomics Utils</name>
<description>Common Java files for Google Genomics integrations.</description>
<url>https://github.com/googlegenomics/utils-java</url>
<groupId>com.google.cloud.genomics</groupId>
<artifactId>google-genomics-utils</artifactId>
<packaging>jar</packaging>
<version>v1-0.9-SNAPSHOT</version>
<organization>
<name>Google</name>
<url>http://www.google.com/</url>
</organization>
<licenses>
<license>
<name>The Apache Software License, Version 2.0</name>
<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
<distribution>repo</distribution>
</license>
</licenses>
<developers>
<developer>
<id>cassiedoll</id>
<name>Cassie Doll</name>
<organization>Google</organization>
<organizationUrl>http://www.google.com</organizationUrl>
<timezone>-7</timezone>
</developer>
<developer>
<id>kwestbrooks</id>
<organization>Google</organization>
<organizationUrl>http://www.google.com</organizationUrl>
<timezone>-7</timezone>
</developer>
</developers>
<scm>
<connection>scm:git:git@github.com:googlegenomics/utils-java.git</connection>
<developerConnection>scm:git:git@github.com:googlegenomics/utils-java.git</developerConnection>
<url>git@github.com:googlegenomics/utils-java.git</url>
<tag>HEAD</tag>
</scm>
<distributionManagement>
<snapshotRepository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
</snapshotRepository>
<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
</distributionManagement>
<!-- This repository is for grpc-java protoc plugin. -->
<pluginRepositories>
<pluginRepository>
<releases>
<updatePolicy>never</updatePolicy>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
<id>central</id>
<name>Central Repository</name>
<url>https://repo.maven.apache.org/maven2</url>
</pluginRepository>
<pluginRepository>
<id>protoc-plugin</id>
<url>https://dl.bintray.com/sergei-ivanov/maven/</url>
</pluginRepository>
</pluginRepositories>
<dependencies>
<dependency>
<groupId>com.github.samtools</groupId>
<artifactId>htsjdk</artifactId>
<version>2.11.0</version>
<exclusions>
<exclusion>
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>${google.guava.version}</version>
</dependency>
<dependency>
<groupId>com.google.api-client</groupId>
<artifactId>google-api-client-java6</artifactId>
<version>${google.api.version}</version>
</dependency>
<dependency>
<groupId>com.google.apis</groupId>
<artifactId>google-api-services-genomics</artifactId>
<version>${google.api.genomics.version}</version>
</dependency>
<dependency>
<groupId>com.google.api.grpc</groupId>
<artifactId>grpc-google-genomics-v1</artifactId>
<version>0.1.0</version>
<exclusions>
<exclusion>
<groupId>com.google.api.grpc</groupId>
<artifactId>grpc-google-common-protos</artifactId>
</exclusion>
<exclusion>
<groupId>com.google.api.grpc</groupId>
<artifactId>grpc-google-iam-v1</artifactId>
</exclusion>
<exclusion>
<groupId>com.google.protobuf</groupId>
<artifactId>protobuf-java</artifactId>
</exclusion>
<exclusion>
<groupId>io.grpc</groupId>
<artifactId>grpc-all</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.google.http-client</groupId>
<artifactId>google-http-client-jackson2</artifactId>
<version>${google.api.version}</version>
</dependency>
<dependency>
<groupId>com.google.oauth-client</groupId>
<artifactId>google-oauth-client-jetty</artifactId>
<version>${google.api.version}</version>
</dependency>
<dependency>
<groupId>com.google.auth</groupId>
<artifactId>google-auth-library-credentials</artifactId>
<version>${google.auth.version}</version>
</dependency>
<dependency>
<groupId>com.google.auth</groupId>
<artifactId>google-auth-library-oauth2-http</artifactId>
<version>${google.auth.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.11</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest-all</artifactId>
<version>1.3</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<version>2.8.47</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>io.grpc</groupId>
<artifactId>grpc-netty</artifactId>
<version>${io.grpc.version}</version>
</dependency>
<dependency>
<groupId>io.grpc</groupId>
<artifactId>grpc-protobuf</artifactId>
<version>${io.grpc.version}</version>
</dependency>
<dependency>
<groupId>io.grpc</groupId>
<artifactId>grpc-stub</artifactId>
<version>${io.grpc.version}</version>
</dependency>
<dependency>
<groupId>io.grpc</groupId>
<artifactId>grpc-auth</artifactId>
<version>${io.grpc.version}</version>
</dependency>
<!-- Used to test the custom builder logic -->
<dependency>
<groupId>com.google.apis</groupId>
<artifactId>google-api-services-storage</artifactId>
<version>v1-rev110-1.22.0</version>
<scope>test</scope>
</dependency>
</dependencies>
<profiles>
<profile>
<id>release</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.5</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>java7profile</id>
<activation>
<jdk>[1.7, 1.8)</jdk>
</activation>
<properties>
<alpn.jar>${basedir}/lib/alpn-boot-7.1.3.v20150130.jar</alpn.jar>
</properties>
</profile>
<profile>
<id>java8profile</id>
<activation>
<jdk>[1.8, 1.9)</jdk>
</activation>
<properties>
<alpn.jar>${basedir}/lib/alpn-boot-8.1.7.v20160121.jar</alpn.jar>
</properties>
</profile>
</profiles>
<build>
<extensions>
<extension>
<groupId>kr.motd.maven</groupId>
<artifactId>os-maven-plugin</artifactId>
<version>1.2.3.Final</version>
</extension>
</extensions>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.2</version>
<configuration>
<source>${java.version}</source>
<target>${java.version}</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>2.5</version>
<configuration>
<autoVersionSubmodules>true</autoVersionSubmodules>
<releaseProfiles>release</releaseProfiles>
<goals>deploy</goals>
</configuration>
</plugin>
<!-- adds "mvn verify" command to run the integration tests (any test ending in IT or ITCase). -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
<version>2.18.1</version>
<configuration>
<useSystemClassLoader>false</useSystemClassLoader>
<argLine>-Xbootclasspath/p:${alpn.jar}</argLine>
</configuration>
<executions>
<execution>
<goals>
<goal>integration-test</goal>
<goal>verify</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.eluder.coveralls</groupId>
<artifactId>coveralls-maven-plugin</artifactId>
<version>2.2.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<executions>
<execution>
<id>test-jar</id>
<goals>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
</plugin>
<!--
Use a newer version of the plugin to avoid long build times on
machines with slow Unix group lookups
https://www.mail-archive.com/issues@maven.apache.org/msg95302.html
-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.6</version>
<executions>
<execution>
<goals>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
<properties>
<google.api.version>1.22.0</google.api.version>
<google.auth.version>0.7.1</google.auth.version>
<google.api.genomics.version>v1-rev512-1.22.0</google.api.genomics.version>
<google.guava.version>19.0</google.guava.version>
<io.grpc.version>1.6.1</io.grpc.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.build.targetEncoding>UTF-8</project.build.targetEncoding>
<java.version>1.7</java.version>
</properties>
</project>