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This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.
GCP Variant Transforms
Use cloud technology to annotate human sequence variants in parallel.
Tools for developing and running pipelines with the Genomics API
Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage
AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.
Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.
GA4GH Researcher Identity Tools
Documentation for the Google Genomics cookbook.
Examples for the Google Genomics Pipelines API.
Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API
Common Java files for Google Genomics integrations.
Examples of using CloudML with genomic data.
Example Cloud Datalab iPython Notebooks for genomics use cases.
Scripts and samples for using Grid Engine on Google Cloud Platform.
Advanced BigQuery examples on genomic data.
Examples of how to get started with genomics data in BigQuery in many languages.
Apache Spark jobs such as Principal Coordinate Analysis.
Scripts that create a Google Compute Engine image containing a set of popular genomics software.
Examples of how to get started with the Google Genomics API in many languages.
Tools for using Picard and GATK with the Google Genomics API.
A sample Android app that calls the Google Genomics API.
A de novo variant caller which uses information from a mother, father and child trio with a bayesian inference method.
A suite of Java tools to calculate linkage disequilibrium between variants and load the results into BigQuery and BigTable.
R package containing instructional materials for using GoogleGenomics Bioconductor and bigrquery packages.
Simple log file analysis, with support for Dataflow.