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Google Genomics

Tools for working with the Google Genomics API

48 followers
http://cloud.google.com/life-sciences
gcp-life-sciences-discuss@googlegroups.com

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Popular repositories

readthedocs readthedocs Public archive

Documentation for the Google Genomics cookbook.

142 49
gcp-variant-transforms gcp-variant-transforms Public

GCP Variant Transforms

Python 132 58
dockerflow dockerflow Public archive

Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API

Java 96 17
bigquery-examples bigquery-examples Public archive

Advanced BigQuery examples on genomic data.

Python 88 32
spark-examples spark-examples Public archive

Apache Spark jobs such as Principal Coordinate Analysis.

Scala 73 38
getting-started-bigquery getting-started-bigquery Public archive

Examples of how to get started with genomics data in BigQuery in many languages.

R 53 25

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Showing 10 of 21 repositories

dataflow-java Public archive
Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.

Java 36 Apache-2.0 31 20 (1 issue needs help) 3 Updated Aug 9, 2023
.allstar Public archive

0 1 0 0 Updated Dec 6, 2022
.github Public archive

0 0 0 0 Updated Oct 26, 2022
gcp-variant-transforms Public
GCP Variant Transforms

Python 132 Apache-2.0 58 108 (3 issues need help) 4 Updated Mar 31, 2022
variant-annotation Public Forked from verilylifesciences/variant-annotation
Use cloud technology to annotate human sequence variants in parallel.

Jupyter Notebook 11 Apache-2.0 11 2 1 Updated Jun 4, 2021
readthedocs Public archive
Documentation for the Google Genomics cookbook.

142 Apache-2.0 49 8 0 Updated May 20, 2020
pipelines-tools Public
Tools for developing and running pipelines with the Genomics API

Go 24 Apache-2.0 11 6 3 Updated Jan 16, 2020
htsget Public archive
Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage

Go 24 Apache-2.0 10 5 (1 issue needs help) 5 Updated Nov 19, 2019
gcp-deepvariant-runner Public
This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.

Python 2 Apache-2.0 6 6 4 Updated Sep 11, 2019
cloudml-examples Public archive
Examples of using CloudML with genomic data.

Python 18 Apache-2.0 11 0 0 Updated May 24, 2019

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