• GCP Variant Transforms

    Python 40 15 Apache-2.0 1 issue needs help Updated Aug 14, 2018
  • Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage

    Go 12 6 Apache-2.0 1 issue needs help Updated Aug 13, 2018
  • Tools for developing and running pipelines with the Genomics API

    Go 5 6 Apache-2.0 1 issue needs help Updated Aug 2, 2018
  • Use cloud technology to annotate human sequence variants in parallel.

    Jupyter Notebook 3 7 Apache-2.0 Updated Jul 24, 2018
  • Codelabs demonstrating usage of several tools and systems on genomic data.

    Java 45 28 Apache-2.0 Updated Mar 8, 2018
  • Documentation for the Google Genomics cookbook.

    129 44 Apache-2.0 Updated Mar 7, 2018
  • Examples for the Google Genomics Pipelines API.

    Python 40 33 BSD-3-Clause Updated Dec 15, 2017
  • Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API

    Java 78 12 Apache-2.0 Updated Nov 21, 2017
  • Common Java files for Google Genomics integrations.

    Java 4 9 Apache-2.0 Updated Oct 30, 2017
  • Examples of using CloudML with genomic data.

    Python 7 6 Apache-2.0 Updated Oct 30, 2017
  • Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.

    Java 31 27 Apache-2.0 1 issue needs help Updated Oct 23, 2017
  • Example Cloud Datalab iPython Notebooks for genomics use cases.

    Jupyter Notebook 17 5 Apache-2.0 Updated Sep 5, 2017
  • Scripts and samples for using Grid Engine on Google Cloud Platform.

    Shell 7 3 Apache-2.0 Updated Aug 2, 2017
  • Advanced BigQuery examples on genomic data.

    Python 72 28 Apache-2.0 Updated Jun 9, 2017
  • Examples of how to get started with genomics data in BigQuery in many languages.

    R 49 20 Apache-2.0 Updated Jun 9, 2017
  • Python 8 92 Updated Feb 14, 2017
  • Apache Spark jobs such as Principal Coordinate Analysis.

    Scala 76 37 Apache-2.0 1 issue needs help Updated Jan 30, 2017
  • Scripts that create a Google Compute Engine image containing a set of popular genomics software.

    Shell 6 6 Apache-2.0 Updated Oct 21, 2016
  • Examples of how to get started with the Google Genomics API in many languages.

    HTML 32 14 Apache-2.0 Updated Aug 15, 2016
  • Provides a simple genome browser that pulls data from the API in Python.

    JavaScript 75 22 Apache-2.0 Updated Aug 12, 2016
  • Tools for using Picard and GATK with the Google Genomics API.

    Java 14 8 Apache-2.0 Updated Jul 29, 2016
  • A simple web application that demonstrates how javascript can be used to fetch data from the Google Genomics APIs.

    HTML 12 5 Apache-2.0 Updated Jul 20, 2016
  • A sample Android app that calls the Google Genomics API.

    Java 2 Apache-2.0 Updated Jun 16, 2016
  • A de novo variant caller which uses information from a mother, father and child trio with a bayesian inference method.

    Java 6 5 Apache-2.0 Updated Jun 9, 2016
  • A suite of Java tools to calculate linkage disequilibrium between variants and load the results into BigQuery and BigTable.

    Jupyter Notebook 6 2 Apache-2.0 1 issue needs help Updated May 5, 2016
  • R package containing instructional materials for using GoogleGenomics Bioconductor and bigrquery packages.

    HTML 5 8 Apache-2.0 Updated Feb 3, 2016
  • AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.

    Go 1 1 Apache-2.0 Updated Nov 30, 2015
  • Simple log file analysis, with support for Dataflow.

    Java 1 1 Apache-2.0 Updated Aug 18, 2015