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Might have to do with the fact this genome has five_prime_UTR and three_prime_UTR features, but gffread should be able to handle that and produce exon, CDS, and mRNA output features where the exon and mRNA ranges include the UTR regions and the CDS ranges do not.
hermidalc
changed the title
Segmentation fault or corrupted output GFF when using -C option with GCA_000843825.1 GFF file
Segmentation fault or corrupted output GFF when using -C coding only option on multiple public NCBI genome assembly GFF files
Nov 14, 2022
hermidalc
changed the title
Segmentation fault or corrupted output GFF when using -C coding only option on multiple public NCBI genome assembly GFF files
Segmentation fault or corrupted output GFF when using -C coding only option on multiple NCBI genome assembly GFF files
Nov 14, 2022
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/843/825/GCA_000843825.1_ViralProj14424/GCA_000843825.1_ViralProj14424_genomic.gff.gz
This either segfaults or produces a corrupted output GFF file. I've run into other examples with NCBI genome assembly GFF files.
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