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75 Open 53 Closed
75 Open 53 Closed
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Issues list

*** stack smashing detected ***: gffread terminated
#134 opened Apr 22, 2024 by dengyang111
@gpertea
3
What does the -r option do in gffread?
#133 opened Mar 21, 2024 by zigge90
1
Please delete my post
#132 opened Mar 14, 2024 by santataRU
-E prints errors but cannot find a way to write errors to a file
#131 opened Mar 8, 2024 by Angsty-Wondergirl
The option "-S" does not work
#130 opened Feb 9, 2024 by sanyalab
gffread -w works but not -x and -y
#129 opened Jan 8, 2024 by Ruiqi-CUB
Segmentation fault --- exact cds and protein from genome
#128 opened Jan 7, 2024 by 710744562
CDS and protein
#127 opened Dec 18, 2023 by Gon1976
Enhancement request: Smaller Gff3 from a larger file
#126 opened Nov 24, 2023 by sanyalab
Large genome or large chromosome bug
#125 opened Nov 20, 2023 by xiekunwhy
@gpertea
3
How does --sort-by work?
#123 opened Oct 28, 2023 by juanjo255
Wrong thread, could you please delete the issue.
#122 opened Oct 23, 2023 by artemyzhigulev
double free or corruption (!prev) and gff corruption with ribosomal slippage bug
#121 opened Sep 30, 2023 by alephreish
@gpertea
1
converted gtf file is empty
#120 opened Sep 20, 2023 by sumitra20
1
bad error message when command line option mistyped
#119 opened Aug 22, 2023 by diekhans
The converted gtf file sizes 0 bytes
#118 opened Jun 24, 2023 by 183136
1
about get transcript.fa from gtf file
#117 opened Jun 12, 2023 by siyuyang1013
gffread to protein
#115 opened Mar 28, 2023 by bijendrabio
2
Missing gene_id for trans-splicing exons when converting gff to gtf
#114 opened Dec 22, 2022 by Fan-iX
problem with stopcodons in-frame encoding selenocysteine
#113 opened Dec 1, 2022 by MiSchwabe
CDS gets filtered out and its attributes overwrite attributes for another CDS in the same gene
#112 opened Nov 16, 2022 by hermidalc
2
pseudo feature not filtered with --no-pseudo and -F options together
#111 opened Nov 16, 2022 by hermidalc
Failure to convert gene and child CDSes to exons with parent mRNAs which are children of gene
#110 opened Nov 14, 2022 by hermidalc
Incorrect change of intron to mRNA feature
#109 opened Nov 13, 2022 by hermidalc
Segmentation fault or corrupted output GFF when using -C coding only option on multiple NCBI genome assembly GFF files
#108 opened Nov 12, 2022 by hermidalc
1
ProTip! Exclude everything labeled bug with -label:bug.