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gffread -w works but not -x and -y #129

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Ruiqi-CUB opened this issue Jan 8, 2024 · 0 comments
Open

gffread -w works but not -x and -y #129

Ruiqi-CUB opened this issue Jan 8, 2024 · 0 comments

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@Ruiqi-CUB
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Hi there, thanks for developing this very useful tool!

I tried to use it to extract CDS and protein from a genome and corresponding gff file.

It works with -w flag and gives me the output. However, it doesn't work with -x or -y flag. Do you happy to know what could cause the issue?

Here is the code I used:
gffread -w(or -x or -y) output.fasta -g genome.fna genome_annot.gff

Thanks a lot
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