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CASC #599

Merged
merged 119 commits into from
May 20, 2021
Merged

CASC #599

merged 119 commits into from
May 20, 2021

Commits on Dec 7, 2020

  1. first tests, class skeleton

    @loftusa
    loftusa committed Dec 7, 2020
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  2. skeleton outline for future tests

    @loftusa
    loftusa committed Dec 7, 2020
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Commits on Dec 8, 2020

  1. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Dec 8, 2020
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Commits on Feb 4, 2021

  1. start working on fit

    @loftusa
    loftusa committed Feb 4, 2021
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  2. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Feb 4, 2021
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  3. middle of doing stuff

    @loftusa
    loftusa committed Feb 4, 2021
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Commits on Feb 6, 2021

  1. cleanup

    @loftusa
    loftusa committed Feb 6, 2021
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Commits on Feb 7, 2021

  1. nclust

    @loftusa
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Commits on Feb 9, 2021

  1. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Feb 9, 2021
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  2. high-dimensional covariates experiment

    @loftusa
    loftusa committed Feb 9, 2021
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Commits on Feb 13, 2021

  1. remove fluff code

    @loftusa
    loftusa committed Feb 13, 2021
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  2. add inline documentation

    @loftusa
    loftusa committed Feb 13, 2021
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Commits on Feb 16, 2021

  1. add case to init, add arguments to init, tests

    @loftusa
    loftusa committed Feb 16, 2021
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  2. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Feb 16, 2021
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Commits on Feb 17, 2021

  1. get all tests working

    @loftusa
    loftusa committed Feb 17, 2021
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  2. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed Feb 17, 2021
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Commits on Feb 19, 2021

  1. add option to not fit, add transform, change test params

    @loftusa
    loftusa committed Feb 19, 2021
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Commits on Feb 21, 2021

  1. add casc and normalization

    @loftusa
    loftusa committed Feb 21, 2021
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Commits on Feb 26, 2021

  1. add tuning algorithm

    @loftusa
    loftusa committed Feb 26, 2021
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Commits on Feb 27, 2021

  1. proper bounds on tuning parameter

    @loftusa
    loftusa committed Feb 27, 2021
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  2. stable version! (but messy)

    @loftusa
    loftusa committed Feb 27, 2021
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  3. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Feb 27, 2021
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  4. actually minor bug

    @loftusa
    loftusa committed Feb 27, 2021
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  5. clarity on tuning param docstring

    @loftusa
    loftusa committed Feb 27, 2021
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  6. commented out much of the debugging code

    @loftusa
    loftusa committed Feb 27, 2021
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Commits on Feb 28, 2021

  1. added parallelization

    @loftusa
    loftusa committed Feb 28, 2021
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  2. add TODOs, clean up a bit

    @loftusa
    loftusa committed Feb 28, 2021
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Commits on Mar 1, 2021

  1. change name of tuning param

    @loftusa
    loftusa committed Mar 1, 2021
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  2. added verbosity mode and n_jobs

    @loftusa
    loftusa committed Mar 1, 2021
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Commits on Mar 2, 2021

  1. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Mar 2, 2021
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  2. center covariates correctly

    @loftusa
    loftusa committed Mar 2, 2021
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  3. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed Mar 2, 2021
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Commits on Mar 3, 2021

  1. current

    @loftusa
    loftusa committed Mar 3, 2021
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Commits on Mar 14, 2021

  1. change tuning runs

    @loftusa
    loftusa committed Mar 14, 2021
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Commits on Mar 15, 2021

  1. randomized_svd

    @loftusa
    loftusa committed Mar 15, 2021
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Commits on Mar 16, 2021

  1. use lanczos algorithm

    @loftusa
    loftusa committed Mar 16, 2021
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  2. python 3.7 compatibility

    @loftusa
    loftusa committed Mar 16, 2021
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  3. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Mar 16, 2021
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  4. fix tests

    @loftusa
    loftusa committed Mar 16, 2021
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  5. minor bug

    @loftusa
    loftusa committed Mar 16, 2021
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  6. remove comments and extraneous code

    @loftusa
    loftusa committed Mar 16, 2021
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  7. Add documentation on extra functions

    @loftusa
    loftusa committed Mar 16, 2021
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Commits on Mar 19, 2021

  1. small update

    @loftusa
    loftusa committed Mar 19, 2021
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  2. cut out the tuning algorithm and massively simplify

    @loftusa
    loftusa committed Mar 19, 2021
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Commits on Mar 21, 2021

  1. error checking, more small fixes

    @loftusa
    loftusa committed Mar 21, 2021
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Commits on Mar 23, 2021

  1. fix cca

    @loftusa
    loftusa committed Mar 23, 2021
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  2. make alpha work

    @loftusa
    loftusa committed Mar 23, 2021
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  3. fix tests again

    @loftusa
    loftusa committed Mar 23, 2021
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  4. add alpha-value test

    @loftusa
    loftusa committed Mar 23, 2021
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Commits on Mar 26, 2021

  1. remove cca (ran slower than assortative on big graphs, and thats the … 

    …only reason we included it)
    @loftusa
    loftusa committed Mar 26, 2021
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  2. add tutorial to index

    @loftusa
    loftusa committed Mar 26, 2021
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  3. remove cca from tests

    @loftusa
    loftusa committed Mar 26, 2021
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  4. let outer labels be a list in plot, add warning when hierarchy labels… 

    … arent used properly
    @loftusa
    loftusa committed Mar 26, 2021
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  5. add hierarchy labels section into heatmap tutorial

    @loftusa
    loftusa committed Mar 26, 2021
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  6. fix small seaborn bug

    @loftusa
    loftusa committed Mar 26, 2021
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Commits on Mar 27, 2021

  1. cleaner plot code

    @loftusa
    loftusa committed Mar 27, 2021
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Commits on Mar 30, 2021

  1. change name of case

    @loftusa
    loftusa committed Mar 30, 2021
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  2. add binary_heatmap function, remove out unecessary limitation on xtic… 

    …klabels and yticklabels
    @loftusa
    loftusa committed Mar 30, 2021
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Commits on Apr 1, 2021

  1. add error checking back in

    @loftusa
    loftusa committed Apr 1, 2021
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  2. colorbar_ticklabels option in binary_heatmap

    @loftusa
    loftusa committed Apr 1, 2021
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  3. fix plot

    @loftusa
    loftusa committed Apr 1, 2021
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Commits on Apr 2, 2021

  1. add binary_heatmap to tutorial

    @loftusa
    loftusa committed Apr 2, 2021
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  2. change X to Y

    @loftusa
    loftusa committed Apr 2, 2021
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Commits on Apr 3, 2021

  1. change input to fit to a tuple

    @loftusa
    loftusa committed Apr 3, 2021
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  2. Y as covariates in tutorial, add check for square adj matrix

    @loftusa
    loftusa committed Apr 3, 2021
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  3. update index

    @loftusa
    loftusa committed Apr 3, 2021
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Commits on Apr 4, 2021

  1. fix tests

    @loftusa
    loftusa committed Apr 4, 2021
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Commits on Apr 7, 2021

  1. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Apr 7, 2021
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  2. refactor out plotting stuff

    @loftusa
    loftusa committed Apr 7, 2021
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  3. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed Apr 7, 2021
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Commits on Apr 10, 2021

  1. add Lanczos algorithm speedup

    @loftusa
    loftusa committed Apr 10, 2021
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  2. add test for new SVD

    @loftusa
    loftusa committed Apr 10, 2021
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  3. import from collections.abc (deal with depracated feature)

    @loftusa
    loftusa committed Apr 10, 2021
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Commits on Apr 11, 2021

  1. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Apr 11, 2021
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  2. fix tests, make is_almost_symmetric work with LinearOperators

    @loftusa
    loftusa committed Apr 11, 2021
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  3. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed Apr 11, 2021
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  4. fix svd test

    @loftusa
    loftusa committed Apr 11, 2021
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  5. fix check_symmetric for sparse matrices

    @loftusa
    loftusa committed Apr 11, 2021
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  6. more general check for sparse matrices

    @loftusa
    loftusa committed Apr 11, 2021
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  7. fix case embedding tutorial

    @loftusa
    loftusa committed Apr 11, 2021
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  8. fix svd, test for nans

    @loftusa
    loftusa committed Apr 11, 2021
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  9. tutorial fix

    @loftusa
    loftusa committed Apr 11, 2021
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Commits on Apr 12, 2021

  1. remove args-kwargs, fix docstring

    @loftusa
    loftusa committed Apr 12, 2021
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Commits on Apr 13, 2021

  1. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Apr 13, 2021
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Commits on Apr 16, 2021

  1. better commenting on svd

    @loftusa
    loftusa committed Apr 16, 2021
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  2. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed Apr 16, 2021
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Commits on Apr 18, 2021

  1. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Apr 18, 2021
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  2. Update case.py

    @loftusa
    loftusa committed Apr 18, 2021
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Commits on Apr 26, 2021

  1. change embedding algo to eigshc

    @loftusa
    loftusa committed Apr 26, 2021
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  2. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed Apr 26, 2021
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  3. redundant check

    @loftusa
    loftusa committed Apr 26, 2021
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Commits on Apr 27, 2021

  1. more laymanney docstring

    @loftusa
    loftusa committed Apr 27, 2021
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  2. change name in test_svd

    @loftusa
    loftusa committed Apr 27, 2021
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  3. type hinting

    @loftusa
    loftusa committed Apr 27, 2021
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  4. fix type hinting

    @loftusa
    loftusa committed Apr 27, 2021
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  5. update tutorial

    @loftusa
    loftusa committed Apr 27, 2021
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Commits on Apr 28, 2021

  1. black

    @loftusa
    loftusa committed Apr 28, 2021
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Commits on Apr 30, 2021

  1. Merge branch 'dev' into casc

    @loftusa
    loftusa committed Apr 30, 2021
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Commits on May 1, 2021

  1. remove imports, isinstance cleaner

    @loftusa
    loftusa committed May 1, 2021
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  2. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed May 1, 2021
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  3. fix docstring

    @loftusa
    loftusa committed May 1, 2021
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  4. name in fit

    @loftusa
    loftusa committed May 1, 2021
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  5. add centering and scaling option

    @loftusa
    loftusa committed May 1, 2021
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  6. add centering and scaling

    @loftusa
    loftusa committed May 1, 2021
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  7. clearer docstrings

    @loftusa
    loftusa committed May 1, 2021
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Commits on May 4, 2021

  1. args instead of tuple for fit input

    @loftusa
    loftusa committed May 4, 2021
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Commits on May 5, 2021

  1. fix tests

    @loftusa
    loftusa committed May 5, 2021
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Commits on May 6, 2021

  1. Merge branch 'dev' into casc

    @loftusa
    loftusa committed May 6, 2021
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Commits on May 7, 2021

  1. remove directed check in utils

    @loftusa
    loftusa committed May 7, 2021
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  2. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed May 7, 2021
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  3. black

    @loftusa
    loftusa committed May 7, 2021
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Commits on May 13, 2021

  1. Merge branch 'dev' into casc

    @bdpedigo
    bdpedigo committed May 13, 2021
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  2. fix faulty logic in directed check

    @loftusa
    loftusa committed May 13, 2021
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  3. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed May 13, 2021
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Commits on May 19, 2021

  1. Merge branch 'dev' into casc

    @bdpedigo
    bdpedigo committed May 19, 2021
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Commits on May 20, 2021

  1. fix tests

    @loftusa
    loftusa committed May 20, 2021
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  2. Merge branch 'casc' of https://github.com/loftusa/graspologic into casc

    @loftusa
    loftusa committed May 20, 2021
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  3. Merge branch 'dev' into casc

    @loftusa
    loftusa committed May 20, 2021
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  4. fix bug in directed

    @loftusa
    loftusa committed May 20, 2021
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