GitHub - grbot/cram-qc

Run samtools flagstat on a set of CRAM files. Generate a MultiQC report from the output.

To run:

nextflow run https://github.com/grbot/cram-qc --input "/path/*.cram"

or

nextflow run https://github.com/grbot/cram-qc --input "1.cram 2.cram 3.cram"

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
.dockstore.yml		.dockstore.yml
LICENSE		LICENSE
README.md		README.md
main.nf		main.nf
nextflow.config		nextflow.config

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