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Adding Unequal Variance to Signature Analysis T-Test #186

Merged
merged 14 commits into from Sep 21, 2019
Merged

Adding Unequal Variance to Signature Analysis T-Test #186

merged 14 commits into from Sep 21, 2019

Commits on Sep 19, 2019

  1. make independent t-test have equal variance!

    @gwaybio
    gwaybio committed Sep 19, 2019
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  2. add tissue balance and rerun separate notebook

    @gwaybio
    gwaybio committed Sep 19, 2019
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  3. update top features in notebook 2

    @gwaybio
    gwaybio committed Sep 19, 2019
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  4. scientific data updated the URL!

    @gwaybio
    gwaybio committed Sep 19, 2019
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  5. add the actual data in case it updates again

    @gwaybio
    gwaybio committed Sep 19, 2019
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  6. make sure equal variance is false

    @gwaybio
    gwaybio committed Sep 19, 2019
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  7. remove hard coded best features in visualization 

    also calculate t-test in figures after filtering tissues
    @gwaybio
    gwaybio committed Sep 19, 2019
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  8. update full separation plot figure

    @gwaybio
    gwaybio committed Sep 19, 2019
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  9. rerun full signature pipeline

    @gwaybio
    gwaybio committed Sep 19, 2019
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  10. make points in figure bigger b/c using test set

    @gwaybio
    gwaybio committed Sep 19, 2019
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  11. rerun pipeline

    @gwaybio
    gwaybio committed Sep 19, 2019
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Commits on Sep 21, 2019

  1. closes greenelab#187

    @gwaybio
    gwaybio committed Sep 21, 2019
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  2. modify figure for rerunning analysis

    @gwaybio
    gwaybio committed Sep 21, 2019
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  3. rerun pipeline

    @gwaybio
    gwaybio committed Sep 21, 2019
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