A scraper which tries to generate conda recipes for bioconductor and other needed R packages.
You should make sure you have MongoDB installed and running. You should also create
a virtual environment and run pip install -r requirements.txt within it.
Before anything else will work, running python generate_annotation_recipes.py
is required. This will populate a mongo collection with metadata about packages.
Tracking all this metadata in a database allows build_all_recipes.py to be
stopped and restarted without losing work. Once you've done that you can either run:
python build_all_recipes.py
to build all the packages on bioconductor.org, or
python create_recipe.py -n <package-name>
to just build one package by name.
Note that this repo adheres to PEP8 standards with a 100 character line limit.