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Export MongoDB database from Docker #1

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dhimmel opened this issue Mar 22, 2017 · 1 comment
Closed

Export MongoDB database from Docker #1

dhimmel opened this issue Mar 22, 2017 · 1 comment

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@dhimmel
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dhimmel commented Mar 22, 2017

The goal is to export the MongoDB containing cached Crossref items. We could then archive this file, say on figshare, so others don't have to submit insane amounts of API queries.
@dhimmel
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dhimmel commented Mar 22, 2017

Currently, I've tried the following command

# Dump docker
docker run \
  --rm \
  --link=mongo-crossref:mongo-crossref-dump \
  --volume=`pwd`/db-export:/backup \
  mongo:3.4.2 \
  bash -c 'mongodump --out=/backup --host=0.0.0.0'

However, this errs with:

Failed: error connecting to db server: no reachable servers

@dhimmel dhimmel closed this as completed Apr 3, 2017
dhimmel added a commit that referenced this issue Apr 3, 2017
@dhimmel
Complete works query
10488df 
Queries began on 2017-03-21 and completed on 2017-04-02. The process
died or stalled several times, but was restarted using cursor.
In total, 87,542,370 works were retrieved and stored in MongoDB.

Add mongoexport command. Closes
#1
Add mongodb to environment for mongoexport. Used `mongodb=2` due to
ContinuumIO/anaconda-issues#890
@alberto-martin alberto-martin mentioned this issue Jan 2, 2019
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@dhimmel