installation trouble

[DcornishUCL]

Hi,

I am attempting to compile your package from github however, I am receiving the following error messages (below). Do you know the meaning of these or how to rectify the problem? Any help would be much appreciated.

Thank you and best wishes,

Dean

.../glactools/tabixpp/htslib/cram/cram_codecs.c:1768: undefined reference to __intel_sse2_strlen' htslib/libhts.a(cram_codecs.o): In function cram_byte_array_stop_decode_block':
.../glactools/tabixpp/htslib/cram/cram_codecs.c:1682: undefined reference to _intel_fast_memcpy' collect2: error: ld returned 1 exit status make[2]: *** [tabix++] Error 1 make[2]: Leaving directory .../glactools/tabixpp'
make[1]: *** [all-recur] Error 1
make[1]: Leaving directory `.../glactools/tabixpp'
make: *** [tabixpp/tabix.o] Error 2

[grenaud]

Just a question can you compile tabixpp? tir. d. 15. feb. 2022 3.13 PM skrev Dean Cornish ***@***.***>:

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Hi, I am attempting to compile your package from github however, I am receiving the following error messages (below). Do you know the meaning of these or how to rectify the problem? Any help would be much appreciated. Thank you and best wishes, Dean .../glactools/tabixpp/htslib/cram/cram_codecs.c:1768: undefined reference to __intel_sse2_strlen' htslib/libhts.a(cram_codecs.o): In function cram_byte_array_stop_decode_block': .../glactools/tabixpp/htslib/cram/cram_codecs.c:1682: undefined reference to _intel_fast_memcpy' collect2: error: ld returned 1 exit status make[2]: *** [tabix++] Error 1 make[2]: Leaving directory .../glactools/tabixpp' make[1]: *** [all-recur] Error 1 make[1]: Leaving directory `.../glactools/tabixpp' make: *** [tabixpp/tabix.o] Error 2 — Reply to this email directly, view it on GitHub <#27>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAQRNI42S4OVS4F46GT5V2LU3JNO5ANCNFSM5OOUWWRQ> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[DcornishUCL]

Hi,

I just tried to compile tabixpp but that also produces an error:

git clone https://github.com/ekg/tabixpp

cd tabixpp

make

*** No rule to make target htslib/htslib/bgzf.h', needed by tabix.o'. Stop.

Best,

Dean

[grenaud]

ok can you build htslib?

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On Wed, Feb 16, 2022 at 12:01 PM Dean Cornish ***@***.***> wrote: Hi, I just tried to compile tabixpp but that also produces an error: git clone https://github.com/ekg/tabixpp cd tabixpp make *** No rule to make target htslib/htslib/bgzf.h', needed by tabix.o'. Stop. Best, Dean — Reply to this email directly, view it on GitHub <#27 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAQRNIZI2OYJYMYON3BSJCTU3N7XRANCNFSM5OOUWWRQ> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. You are receiving this because you commented.Message ID: ***@***.***>

[DcornishUCL]

Hi,

I built htslib and attempted to make glactools again and this successfully completed. Thanks so much for your help.

Dean