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greninger-lab

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  1. revica revica Public

    Forked from asereewit/revica

    A reference-based viral consensus genome assembly pipeline

    Nextflow 5

  2. covid_swift_pipeline covid_swift_pipeline Public

    Forked from michellejlin/covid_swift_pipeline

    Nextflow 4 4

  3. lava lava Public archive

    Forked from michellejlin/lava

    LAVA: Longitudinal Analysis of Viral Alleles

    Python 3 2

  4. longitudinal_sarscov2 longitudinal_sarscov2 Public

    R 1

  5. Tpallidum_WGS_Pipeline Tpallidum_WGS_Pipeline Public

    Nextflow 1

  6. HPIV3-HN-secondary-structure HPIV3-HN-secondary-structure Public

    Forked from vpeddu/HPIV3-HN-secondary-structure

    Characterizing the HPIV 3 HN gene RNA secondary structure

    PostScript

Repositories

Showing 10 of 53 repositories
  • REVICA-STRM Public Forked from epiliper/REVICA-STRM
    greninger-lab/REVICA-STRM’s past year of commit activity
    Nextflow 0 1 0 0 Updated Sep 18, 2024
  • rad_assembler Public

    Nextflow pipeline for Reference Assisted De novo assembling whole genome shotgun sequenced viruses.

    greninger-lab/rad_assembler’s past year of commit activity
    Nextflow 0 MIT 1 3 0 Updated Sep 9, 2024
  • mpxv_wgs Public

    A nextflow pipeline for monkeypox virus consensus genome assembly and variants calling

    greninger-lab/mpxv_wgs’s past year of commit activity
    Nextflow 0 0 0 0 Updated Sep 6, 2024
  • nf_mpxv_f13l Public Forked from asereewit/nf_mpxv_f13l

    A nextflow pipeline for MPXV consensus genome assembly and F13L variants calling

    greninger-lab/nf_mpxv_f13l’s past year of commit activity
    Nextflow 0 1 0 0 Updated Sep 6, 2024
  • rsv_ampseq Public Forked from asereewit/rsv_ampseq

    Nextflow pipeline for genome assembly and variants calling of human respiratory syncytial virus amplicon sequencing

    greninger-lab/rsv_ampseq’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Sep 6, 2024
  • RAVA_Pipeline Public
    greninger-lab/RAVA_Pipeline’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 4, 2024
  • revica Public Forked from asereewit/revica

    A reference-based viral consensus genome assembly pipeline

    greninger-lab/revica’s past year of commit activity
    Nextflow 5 1 0 1 Updated Sep 4, 2024
  • vadr_annotator Public
    greninger-lab/vadr_annotator’s past year of commit activity
    Groovy 0 MIT 0 0 0 Updated Jul 31, 2024
  • Yin_CHIKV_fidelity_supp Public

    Supplemental information for Figures 4 and 5 of Mutations in Chikungunya Virus nsP4 Decrease Sensitivity to the Broad-Spectrum Antiviral 4′-Fluorouridine.

    greninger-lab/Yin_CHIKV_fidelity_supp’s past year of commit activity
    HTML 0 0 0 0 Updated Jul 30, 2024
  • vadr-models-hsv Public

    Human alphaherpesvirus 1 and 2 (HSV-1, HSV-2) VADR models

    greninger-lab/vadr-models-hsv’s past year of commit activity
    Batchfile 0 1 0 0 Updated Jul 23, 2024
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