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nextflow.config
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nextflow.config
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profiles {
standard {
process {
withName: 'denoisePacBioFiles' {
cpus = 8
memory = 12.GB
}
withName: 'createFrequencyTables_PacBio' {
cpus = 8
memory = 12.GB
}
withName: 'createAllAssignments' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyTables_Illumina' {
cpus = 8
memory = 12.GB
}
withName: 'filterReads' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyPlots_Illumina' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyPlots_PacBio' {
cpus = 1
memory = 1.GB
}
withName: 'createPacbioVsIlluminaPlots' {
cpus = 1
memory = 1.GB
}
withName: 'createVariableRegionComparisons' {
cpus = 8
memory = 12.GB
}
withName: 'createPacBioTree' {
cpus = 8
memory = 12.GB
}
withName: 'visualizeAllData' {
cpus = 4
memory = 8.GB
}
}
}
standardMORE {
process {
withName: 'denoisePacBioFiles' {
cpus = 18
memory = 60.GB
}
withName: 'createFrequencyTables_PacBio' {
cpus = 18
memory = 60.GB
}
withName: 'createAllAssignments' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyTables_Illumina' {
cpus = 18
memory = 60.GB
}
withName: 'filterReads' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyPlots_Illumina' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyPlots_PacBio' {
cpus = 1
memory = 1.GB
}
withName: 'createPacbioVsIlluminaPlots' {
cpus = 1
memory = 1.GB
}
withName: 'createVariableRegionComparisons' {
cpus = 18
memory = 60.GB
}
withName: 'createPacBioTree' {
cpus = 18
memory = 60.GB
}
withName: 'visualizeAllData' {
cpus = 14
memory = 30.GB
}
}
}
laptop {
process {
withName: 'denoisePacBioFiles' {
cpus = 4
memory = 8.GB
}
withName: 'createFrequencyTables_PacBio' {
cpus = 4
memory = 8.GB
}
withName: 'createAllAssignments' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyTables_Illumina' {
cpus = 4
memory = 8.GB
}
withName: 'filterReads' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyPlots_Illumina' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyPlots_PacBio' {
cpus = 1
memory = 1.GB
}
withName: 'createPacbioVsIlluminaPlots' {
cpus = 1
memory = 1.GB
}
withName: 'createVariableRegionComparisons' {
cpus = 2
memory = 4.GB
}
withName: 'createPacBioTree' {
cpus = 1
memory = 1.GB
}
withName: 'visualizeAllData' {
cpus = 2
memory = 4.GB
}
}
}
Cloud {
process {
withName: 'denoisePacBioFiles' {
cpus = 48
memory = 96.GB
}
withName: 'createFrequencyTables_PacBio' {
cpus = 48
memory = 96.GB
}
withName: 'createAllAssignments' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyTables_Illumina' {
cpus = 48
memory = 96.GB
}
withName: 'filterReads' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyPlots_Illumina' {
cpus = 1
memory = 1.GB
}
withName: 'createFrequencyPlots_PacBio' {
cpus = 1
memory = 1.GB
}
withName: 'createPacbioVsIlluminaPlots' {
cpus = 1
memory = 1.GB
}
withName: 'createVariableRegionComparisons' {
cpus = 48
memory = 96.GB
}
withName: 'createPacBioTree' {
cpus = 4
memory = 8.GB
}
withName: 'visualizeAllData' {
cpus = 4
memory = 8.GB
}
}
aws.client.maxParallelTransfers = 2
}
}