Skip to content
master
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
bin
 
 
 
 
 
 
 
 
 
 
 
 
map
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

README.md

pybio: basic genomics toolset

pybio is a Python framework for basic genomics operations. The package is a dependency to apa (alternative polyadenylation) and RNAmotifs2 (motif cluster analysis). The pybio package provides:

  • automatized download of genome assemblies from Ensembl and STAR indexing,
  • automatized download of genome annotations from Ensembl GTF with fast-searching capabilities,
  • Fasta, Fastq, bedGraph and other file format handling,
  • motif sequence searches,
  • alternative polyadenylation site-pair classification (same-exon, skipped-exon, composite-exon),
  • and other.

Authors

pybio is developed and supported by Gregor Rot.

Reporting problems

Use the issues page to report issues and leave suggestions.

You can’t perform that action at this time.