Merge pull request #526 from griffithlab/civicpy

Add job to create the civicpy pkl file

app/jobs/create_civicpy_cache_pkl.py

@@ -0,0 +1,15 @@
+class CreateCivicpyCachePkl < ActiveJob::Base
+  def perform
+    system("CIVICPY_CACHE_FILE=#{civicpy_cache_file_location} python3 #{script_path}")
+    self.class.set(wait_until: Date.tomorrow.midnight).perform_later
+  end
+
+  def script_path
+    File.join(Rails.root, 'misc_scripts', 'create_civicpy_cache_pkl.py')
+  end
+
+  private
+  def civicpy_cache_file_location
+    File.join(Rails.root, 'public', 'downloads', 'civicpy_cache.pkl')
+  end
+end

lib/capistrano/tasks/dependencies.rake

@@ -4,6 +4,7 @@ namespace :dependencies do
     on roles(:all) do
       execute "sudo apt-get -y install python python3-pip"
       execute :pip3, "install ndexutil -r #{current_path}/misc_scripts/ndex_requirements.txt --no-cache-dir --no-deps"
+      execute :pip3, "install civicpy"
     end
   end
 end

misc_scripts/create_civicpy_cache_pkl.py

@@ -0,0 +1,3 @@
+from civicpy import civic
+
+civic.update_cache()