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Original Tuxedo

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@jasonwalker80 jasonwalker80 released this 07 Oct 12:52
· 113 commits to master since this release

The original Tuxedo pipeline, TopHat2, Cufflinks2 and CummeRbund, with alternative alignment strategies for HISAT2 and STAR. Digital, raw read counts using htseq-count and alternative differential expression method using edgeR.