for preprint update #1

README.md

@@ -16,4 +16,5 @@
 - Figure 2 can be generated by running `src/immortal_time_bias-KC22.R`
 - Table 2 can be generated by running `src/table_2.R`. 
 - Table 3 can be generated by running `src/table_3.R`.
+- Figure 3 can be generated by running `src/immortal_time_bias0-KB22.R`
 - Table 4 (the main result) and all supplemental tables can be generated by running `src/main_and_supplemental_tables.R`.

results/early_infections.tex

@@ -1,15 +1,15 @@
 \setlength{\LTpost}{0mm}
 \begin{longtable}{lccc}
 \toprule
- & \textbf{non-user}, N = 70\textsuperscript{1} & \textbf{user}, N = 68\textsuperscript{1} & \textbf{p-value}\textsuperscript{2} \\ 
+ & \textbf{non-user}, N = 98\textsuperscript{\textit{1}} & \textbf{user}, N = 80\textsuperscript{\textit{1}} & \textbf{p-value}\textsuperscript{\textit{2}} \\ 
 \midrule
 All Brazilian Health Ministry-mapped individuals &  &  & <0.001 \\ 
-    Covid onset on or after 7 July 2020 & 41 (59\%) & 62 (91\%) &  \\ 
-    Covid onset before 7 July 2020 & 29 (41\%) & 6 (8.8\%) &  \\ 
+    Covid onset on or after 7 July 2020 & 59 (60\%) & 75 (94\%) &  \\ 
+    Covid onset before 7 July 2020 & 39 (40\%) & 5 (6.3\%) &  \\ 
 \bottomrule
 \end{longtable}
 \begin{minipage}{\linewidth}
-\textsuperscript{1}n (\%)\\
-\textsuperscript{2}Fisher\textquotesingle{}s exact test\\
+\textsuperscript{\textit{1}}n (\%)\\
+\textsuperscript{\textit{2}}Fisher's exact test\\
 \end{minipage}
 

results/early_infections_deaths.tex

@@ -1,23 +1,23 @@
 \setlength{\LTpost}{0mm}
 \begin{longtable}{lccc}
 \toprule
- & \textbf{non-user}\textsuperscript{1} & \textbf{user}\textsuperscript{1} & \textbf{p-value}\textsuperscript{2} \\ 
+ & \textbf{non-user}\textsuperscript{\textit{1}} & \textbf{user}\textsuperscript{\textit{1}} & \textbf{p-value}\textsuperscript{\textit{2}} \\ 
 \midrule
 \multicolumn{4}{l}{Alive} \\ 
 \midrule
- &  &  & 0.092 \\ 
-    Covid onset on or after 7 July 2020 & 13 (62\%) & 24 (86\%) &  \\ 
-    Covid onset before 7 July 2020 & 8 (38\%) & 4 (14\%) &  \\ 
+ &  &  & 0.088 \\ 
+    Covid onset on or after 7 July 2020 & 13 (62\%) & 19 (86\%) &  \\ 
+    Covid onset before 7 July 2020 & 8 (38\%) & 3 (14\%) &  \\ 
 \midrule
 \multicolumn{4}{l}{Dead} \\ 
 \midrule
  &  &  & <0.001 \\ 
-    Covid onset on or after 7 July 2020 & 28 (57\%) & 38 (95\%) &  \\ 
-    Covid onset before 7 July 2020 & 21 (43\%) & 2 (5.0\%) &  \\ 
+    Covid onset on or after 7 July 2020 & 46 (60\%) & 56 (97\%) &  \\ 
+    Covid onset before 7 July 2020 & 31 (40\%) & 2 (3.4\%) &  \\ 
 \bottomrule
 \end{longtable}
 \begin{minipage}{\linewidth}
-\textsuperscript{1}n (\%)\\
-\textsuperscript{2}Fisher\textquotesingle{}s exact test\\
+\textsuperscript{\textit{1}}n (\%)\\
+\textsuperscript{\textit{2}}Fisher's exact test\\
 \end{minipage}