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Automated CRAN import 2024-03-26
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Compatible with the following channels:

(list (channel
        (name 'guix)
        (url "https://git.savannah.gnu.org/git/guix.git")
        (branch "master")
        (commit "f3a9c701ac18ba9023f6d96629f9d8bb2df67a40")
        (introduction
         (make-channel-introduction "9edb3f66fd807b096b48283debdcddccfea34bad"
          (openpgp-fingerprint
           "BBB0 2DDF 2CEA F6A8 0D1D  E643 A2A0 6DF2 A33A 54FA")))))
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User for Guix CRAN updates committed Mar 26, 2024
1 parent dafaebe commit 9ac8017
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Showing 19 changed files with 387 additions and 155 deletions.
4 changes: 2 additions & 2 deletions guix-cran/packages/a.scm
View file
Expand Up @@ -10889,13 +10889,13 @@ effects thanks to @code{jQuery} @code{AniView}'.")
(define-public r-anisna
(package
(name "r-anisna")
(version "1.1.0")
(version "1.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "aniSNA" version))
(sha256
(base32 "0vmpdmqr3cwpk588y116bv2nv1xcaya0mg53zcl3yc223df134zp"))))
(base32 "1rvrpcw1j5xwz8ns7njvf8blal8nh6c45avy5rpzb5kifiv8yxgy"))))
(properties `((upstream-name . "aniSNA")))
(build-system r-build-system)
(propagated-inputs (list r-stringr
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24 changes: 24 additions & 0 deletions guix-cran/packages/b.scm
View file
Expand Up @@ -11530,6 +11530,30 @@ partitions the system in fast and slow reactions. @code{bioPN} algorithms are
developed in C to achieve adequate performance.")
(license license:gpl2+)))

(define-public r-biopixr
(package
(name "r-biopixr")
(version "0.2.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "biopixR" version))
(sha256
(base32 "1341yg226r4bzh3cw4ygjnychd5vnm9xfbb0agyd7razz49iahz7"))))
(properties `((upstream-name . "biopixR")))
(build-system r-build-system)
(propagated-inputs (list r-magick r-imager r-foreach r-data-table))
(native-inputs (list r-knitr))
(home-page "https://github.com/Brauckhoff/biopixR")
(synopsis "Extracting Insights from Biological Images")
(description
"Combines the magick and imager packages to streamline image analysis, focusing
on feature extraction and quantification from biological images, especially
microparticles. By providing high throughput pipelines and clustering
capabilities, @code{biopixR} facilitates efficient insight generation for
researchers (Schneider J. et al. (2019) <doi:10.21037/jlpm.2019.04.05>).")
(license license:lgpl3+)))

(define-public r-biopetsurv
(package
(name "r-biopetsurv")
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53 changes: 38 additions & 15 deletions guix-cran/packages/c.scm
View file
Expand Up @@ -15,11 +15,11 @@
#:use-module (gnu packages check)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages geo)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages maths)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages compression)
#:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages photo)
#:use-module (guix-cran packages z)
#:use-module (guix-cran packages y)
Expand Down Expand Up @@ -5515,13 +5515,13 @@ position of the first crossing (or none).")
(define-public r-crossover
(package
(name "r-crossover")
(version "0.1-21")
(version "0.1-22")
(source
(origin
(method url-fetch)
(uri (cran-uri "Crossover" version))
(sha256
(base32 "0mqpfasqdgv4s77ln3c45pjgl2l7wb7b68jl46fzln184n0838l7"))))
(base32 "05fsl22h2q6l0g9hscs4f0w4d3skd9anr570ddmnqicxzdfpap5r"))))
(properties `((upstream-name . "Crossover")))
(build-system r-build-system)
(inputs (list openjdk))
Expand Down Expand Up @@ -6620,13 +6620,13 @@ Surmann (2017). <doi:10.21105/joss.00135>.")
(define-public r-crew
(package
(name "r-crew")
(version "0.9.0")
(version "0.9.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "crew" version))
(sha256
(base32 "17g1sdjlkj7ck5y5k7la2skxkvjd474rkqzq01fgqhiixkygignk"))))
(base32 "1qf7w2px7bw9rgar6fap1v4yyd7899izpq87yl2pqzgbxf93dz1j"))))
(properties `((upstream-name . "crew")))
(build-system r-build-system)
(propagated-inputs (list r-tidyselect
Expand All @@ -6649,10 +6649,10 @@ Surmann (2017). <doi:10.21105/joss.00135>.")
"In computationally demanding analysis projects, statisticians and data
scientists asynchronously deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services. The NNG'-powered mirai R
package by Gao (2023) <https://CRAN.R-project.org/package=mirai> is a sleek and
sophisticated scheduler that efficiently processes these intense workloads. The
crew package extends mirai with a unifying interface for third-party worker
launchers. Inspiration also comes from packages. future by Bengtsson (2021)
package by Gao (2023) <doi:10.5281/zenodo.7912722> is a sleek and sophisticated
scheduler that efficiently processes these intense workloads. The crew package
extends mirai with a unifying interface for third-party worker launchers.
Inspiration also comes from packages. future by Bengtsson (2021)
<doi:10.32614/RJ-2021-048>, rrq by @code{FitzJohn} and Ashton (2023)
<https://github.com/mrc-ide/rrq>, clustermq by Schubert (2019)
<doi:10.1093/bioinformatics/btz284>), and batchtools by Lang, Bischel, and
Expand Down Expand Up @@ -8563,13 +8563,13 @@ confidence intervals.")
(define-public r-coxmos
(package
(name "r-coxmos")
(version "1.0.1")
(version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "Coxmos" version))
(sha256
(base32 "0y7dcwzkj8yqwn44qd1cb1379a0xl5a1949sg7wn6gpgzyn9vgi4"))))
(base32 "052af5hx820wmvflvz4pv3jlmmwap9d0lzx9k7v1ps6cidarz0wm"))))
(properties `((upstream-name . "Coxmos")))
(build-system r-build-system)
(propagated-inputs (list r-tidyr
Expand Down Expand Up @@ -17638,18 +17638,19 @@ the analysed objects.")
(define-public r-compind
(package
(name "r-compind")
(version "3.0")
(version "3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "Compind" version))
(sha256
(base32 "0g5m1dpnadgqszk079rxf6rm0d17qnvfzi7fwbs99sl2nimy3ni9"))))
(base32 "0k45gazca94dscqhy05p68k755al4gd1gilz5svq5h6cv5fijhxk"))))
(properties `((upstream-name . "Compind")))
(build-system r-build-system)
(propagated-inputs (list r-spdep
r-sp
r-smaa
r-rcompadre
r-psych
r-np
r-nonparaeff
Expand Down Expand Up @@ -31600,13 +31601,13 @@ your local computer.")
(define-public r-cheapr
(package
(name "r-cheapr")
(version "0.3.0")
(version "0.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "cheapr" version))
(sha256
(base32 "0qmnfhxgzn4gcn2wx7zwz30kj5zgvcs7dfkayrarf9qmm9ys8rnd"))))
(base32 "0qrdvzq01m0kc243jcddiz8am2l4c5a39bv3qb0m2rpvgg1z8a4c"))))
(properties `((upstream-name . "cheapr")))
(build-system r-build-system)
(propagated-inputs (list r-cpp11 r-collapse))
Expand Down Expand Up @@ -31858,6 +31859,28 @@ algorithms are implemented in C++.")
(license (list license:gpl3
(license:fsdg-compatible "file://LICENSE")))))

(define-public r-changes
(package
(name "r-changes")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "changeS" version))
(sha256
(base32 "1igd2qvs5y2g63byvwn0djbgc5lqi9zx7a0g2dkda1q6snl65yi7"))))
(properties `((upstream-name . "changeS")))
(build-system r-build-system)
(propagated-inputs (list r-stringr r-nls-multstart r-ggplot2))
(native-inputs (list r-knitr))
(home-page "https://github.com/matloff/changeS")
(synopsis "S-Curve Fit for Changepoint Analysis")
(description
"Estimation of changepoints using an \"S-curve\" approximation. Formation of
confidence intervals for changepoint locations and magnitudes. Both abrupt and
gradual changes can be modeled.")
(license license:gpl2+)))

(define-public r-changeranger
(package
(name "r-changeranger")
Expand Down
28 changes: 26 additions & 2 deletions guix-cran/packages/d.scm
View file
Expand Up @@ -2853,6 +2853,30 @@ information on dtangle see Hunt et al. (2019)
<doi:10.1093/bioinformatics/bty926>.")
(license license:gpl3)))

(define-public r-dtableone
(package
(name "r-dtableone")
(version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "Dtableone" version))
(sha256
(base32 "0pv04l4wxf44zva5w96i02g4z8zx3zgjxxjacfg0vh2f7gx4pjnq"))))
(properties `((upstream-name . "Dtableone")))
(build-system r-build-system)
(propagated-inputs (list r-proc r-irr r-epir r-dplyr))
(home-page "https://cran.r-project.org/package=Dtableone")
(synopsis "Tabular Comparison of Paired Diagnostic Tests")
(description
"Offers statistical methods to compare diagnostic performance between two binary
diagnostic tests on the same subject in clinical studies. Includes functions
for generating formatted tables to display diagnostic outcomes, facilitating a
clear and comprehensive comparison directly through the R console. Inspired by
and extending the functionalities of the DT@code{ComPair}', tableone', and
gtsummary packages.")
(license license:gpl2)))

(define-public r-dswe
(package
(name "r-dswe")
Expand Down Expand Up @@ -26384,13 +26408,13 @@ stochastic disability-adjusted life year (DALY) calculation.")
(define-public r-daltoolbox
(package
(name "r-daltoolbox")
(version "1.0.727")
(version "1.0.747")
(source
(origin
(method url-fetch)
(uri (cran-uri "daltoolbox" version))
(sha256
(base32 "0ycbbqcdkk9yhwrrln5xh4j5xfsga4hcn0jc7fgczpjdgv07g8w8"))))
(base32 "0mh8f5zm97mfzm55pjy157a079cs4azis4x0h0j9cflsd0k4nnyd"))))
(properties `((upstream-name . "daltoolbox")))
(build-system r-build-system)
(propagated-inputs (list r-tree
Expand Down
10 changes: 5 additions & 5 deletions guix-cran/packages/e.scm
View file
Expand Up @@ -1760,16 +1760,16 @@ offers enhanced visualizations with interactive elements.")
(define-public r-expirest
(package
(name "r-expirest")
(version "0.1.5")
(version "0.1.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "expirest" version))
(sha256
(base32 "08gwy1fikj7kg7h6fc7w15621jc0prdqdhzx14ad6dvdi5rd33gv"))))
(base32 "1pav81y4n23q42kfvbsdinfyklxwhspsxvfdyvs891zsvy2m93yn"))))
(properties `((upstream-name . "expirest")))
(build-system r-build-system)
(propagated-inputs (list r-rlang r-ggplot2))
(propagated-inputs (list r-rlang r-lifecycle r-ggplot2))
(home-page "https://github.com/piusdahinden/expirest")
(synopsis "Expiry Estimation Procedures")
(description
Expand Down Expand Up @@ -19021,13 +19021,13 @@ original package description is in Goslee and Urban (2007)
(define-public r-ecodiet
(package
(name "r-ecodiet")
(version "2.0.0")
(version "2.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "EcoDiet" version))
(sha256
(base32 "1lgjymm2anb7f11gvg0875wyjjfzbh0y1vwinbidpn2kmgm9b05h"))))
(base32 "0vw6q5yf5aq4gdim7yr188f9hbrd5giaivl27y4qrz987i152v8c"))))
(properties `((upstream-name . "EcoDiet")))
(build-system r-build-system)
(inputs (list jags))
Expand Down
28 changes: 25 additions & 3 deletions guix-cran/packages/f.scm
View file
Expand Up @@ -8282,6 +8282,29 @@ descriptions of FNETS methodology and Owens, Cho and Barigozzi (2024+)
<@code{arXiv:2301.11675>} accompanying the R package.")
(license license:gpl3+)))

(define-public r-fmx
(package
(name "r-fmx")
(version "0.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "fmx" version))
(sha256
(base32 "1biz4vn8inhbmcqfcpdkgja5rz6pzz0h5h8cd5qqqbmyzl4x1acj"))))
(properties `((upstream-name . "fmx")))
(build-system r-build-system)
(propagated-inputs (list r-vgam r-tukeygh77 r-sn r-goftest))
(home-page "https://cran.r-project.org/package=fmx")
(synopsis "Finite Mixture Parametrization")
(description
"This package provides a parametrization framework for finite mixture
distribution using S4 objects. Density, cumulative density, quantile and
simulation functions are defined. Currently normal, Tukey g-&-h, skew-normal
and skew-t distributions are well tested. The gamma, negative binomial
distributions are being tested.")
(license license:gpl2)))

(define-public r-fmultivar
(package
(name "r-fmultivar")
Expand Down Expand Up @@ -21387,17 +21410,16 @@ experiments with noncompliance.")
(define-public r-fact
(package
(name "r-fact")
(version "0.1.0")
(version "0.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "FACT" version))
(sha256
(base32 "0frj0qgdq8j8khy4dlv63zismjczijm0q7j5ha59m0dgxr93khfg"))))
(base32 "0klks2r2jf5v5z2n3gvqbssrpdd6nccbk7izvdl1cknisq8z5w4b"))))
(properties `((upstream-name . "FACT")))
(build-system r-build-system)
(propagated-inputs (list r-r6
r-prediction
r-iml
r-gridextra
r-ggplot2
Expand Down

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