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Blank plot for plotLDA() #3
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Hi @xkcococo, |
@guokai8 I checked the res table and found there are some values in LDAscore table. Here are all the values that we have in this column except for NA.
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Hi @xkcococo, |
@guokai8 |
Hi @xkcococo, |
Set the sig.only=FALSE.
Kai
… On Apr 12, 2021, at 3:17 PM, xkcococo ***@***.***> wrote:
@guokai8 <https://github.com/guokai8>
I have another question that needs you to help with! Thanks in advance.
When I performed plot alpha, I used show,number=TRUE, and pvalue=0.05 as default.
But some of the p.values that even larger than 0.05 (not significant shown in the figure), but some did not show.
I want all p.values show in figures. Could you help me to address this? Thanks!
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@guokai8 Thank you very much! |
Hi @xkcococo, |
@guokai8 absolutely! Have already given star to this pacakge! |
@xkcococo Thanks! |
@guokai8 |
HI @xkcococo, |
@guokai8 |
@xkcococo |
@guokai8 Thanks! |
Hi Kai, Is there a way to pick the taxonomic level I want in my plot for the ldamarker function? Thank you! |
Hi @SalmaES , |
Thanks for providing this package.
I am trying to use it for plotting LDA.
The res table that I get from the function successfully, but when I use:
The plot that generated is blank, only has a x-axis label.
Could you help me to address it ?
Thanks!
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