VirusSeeker-Virome

VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin.

Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
BLAST_Parser_result_check_finish.pl		BLAST_Parser_result_check_finish.pl
BLASTn_NT_parser.pl.sqlite		BLASTn_NT_parser.pl.sqlite
BLASTn_VIRUSDB_parser.pl.sqlite		BLASTn_VIRUSDB_parser.pl.sqlite
BLASTx_NR_parser.pl.sqlite		BLASTx_NR_parser.pl.sqlite
BLASTx_VIRUSDB_parser.pl.sqlite		BLASTx_VIRUSDB_parser.pl.sqlite
Combine_joined_unjoin_reads.pl		Combine_joined_unjoin_reads.pl
Eukaryotic_virus_Generate_report_All_Samples.pl		Eukaryotic_virus_Generate_report_All_Samples.pl
FASTA_file_split_given_numberOfFiles.pl		FASTA_file_split_given_numberOfFiles.pl
FASTQ_PE_file_split.pl		FASTQ_PE_file_split.pl
FASTQ_SE_file_split.pl		FASTQ_SE_file_split.pl
FASTQ_to_FASTA.pl		FASTQ_to_FASTA.pl
FASTQ_to_FASTA_after_BWA.pl		FASTQ_to_FASTA_after_BWA.pl
Generate_assignment_report.pl		Generate_assignment_report.pl
Generate_assignment_summary.pl		Generate_assignment_summary.pl
Get_SimilarSequence_DefinedBy_CD_HIT.pl		Get_SimilarSequence_DefinedBy_CD_HIT.pl
LICENSE		LICENSE
Masked_seq_to_unmasked_seq.pl		Masked_seq_to_unmasked_seq.pl
MegaBLAST_HG_parser.pl		MegaBLAST_HG_parser.pl
MegaBLAST_NT_parser.pl.sqlite		MegaBLAST_NT_parser.pl.sqlite
Phage_Generate_assignment_report.pl		Phage_Generate_assignment_report.pl
Phage_Generate_assignment_summary.pl		Phage_Generate_assignment_summary.pl
Phage_Generate_report_All_Samples.pl		Phage_Generate_report_All_Samples.pl
README.md		README.md
README.txt		README.txt
RepeatMasker_SequenceQualityControl.pl		RepeatMasker_SequenceQualityControl.pl
RepeatMasker_check_SequenceQualityControl.pl		RepeatMasker_check_SequenceQualityControl.pl
Solexa_get_originalSeq_given_fasta.pl		Solexa_get_originalSeq_given_fasta.pl
Tantan_Sequence_Quality_Control.pl		Tantan_Sequence_Quality_Control.pl
Unmasked_seq_to_masked_seq.pl		Unmasked_seq_to_masked_seq.pl
Unmasked_seq_to_masked_seq_After_BacteriaMapping.pl		Unmasked_seq_to_masked_seq_After_BacteriaMapping.pl
VirusSeeker_Virome_run.pl		VirusSeeker_Virome_run.pl
VirusSeeker_Virome_v0.063_cdhit984.pl		VirusSeeker_Virome_v0.063_cdhit984.pl
build_db.sh		build_db.sh
build_db_gi_taxid_nucl.sh		build_db_gi_taxid_nucl.sh
build_db_gi_taxid_prot.sh		build_db_gi_taxid_prot.sh
check_BLASTN_VIRUSDB_Finished_correctly.pl		check_BLASTN_VIRUSDB_Finished_correctly.pl
check_BLASTX_NR_Finished_correctly.pl		check_BLASTX_NR_Finished_correctly.pl
check_BLASTX_VIRUSDB_Finished_correctly.pl		check_BLASTX_VIRUSDB_Finished_correctly.pl
check_BLAST_NT_Finished_correctly.pl		check_BLAST_NT_Finished_correctly.pl
check_Blast_parsed_file.pl		check_Blast_parsed_file.pl
check_MegaBLAST_HOST_Finished_correctly.pl		check_MegaBLAST_HOST_Finished_correctly.pl
check_MegaBLAST_NT_Finished_correctly.pl		check_MegaBLAST_NT_Finished_correctly.pl
check_split_BLASTN_VIRUSDB.pl		check_split_BLASTN_VIRUSDB.pl
check_split_BLASTX_VIRUSDB.pl		check_split_BLASTX_VIRUSDB.pl
check_split_BN.pl		check_split_BN.pl
check_split_BX.pl		check_split_BX.pl
check_split_MegaBLAST_NT.pl		check_split_MegaBLAST_NT.pl
check_split_RepeatMasker.pl		check_split_RepeatMasker.pl

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