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19 Open 67 Closed
19 Open 67 Closed
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Issues list

[Bug] Issue with new version Baysor
#125 opened Sep 18, 2024 by ykashima2
3
[Bug] Isse with running Baysor segmentation on some but not all patches
#123 opened Sep 12, 2024 by marsdenl
5
Handling pseudo 3D information
#122 opened Sep 9, 2024 by Marius1311
2
[Bug] No module named dartie (snakemake)
#121 opened Sep 9, 2024 by marsdenl
3
[Feature & Bug] Xenium explorer displaying both Cellpose and Baysor boundaries
#120 opened Sep 7, 2024 by lguerard
3
[Bug] Error in rule patch_segmentation_baysor
#118 opened Sep 3, 2024 by AnaisJulien
8
[Bug]"Could not find element with name ['cell_circles']"
#117 opened Sep 2, 2024 by Yifan-debug
7
[Feature] General reader for non-commercial datasets
#116 opened Sep 2, 2024 by lopollar
3
sopa.segmentation.transcripts.resolve for Baysor segmentation fails
#115 opened Aug 30, 2024 by Marius1311
3
saving masks to png
#112 opened Aug 23, 2024 by sunshx-bioinfo
9
cell segmentation strategy
#109 opened Aug 20, 2024 by wangjiawen2013
1
[Bug] Morphology.ome.tif low resolution after running Sopa on Xenium Sample
#104 opened Aug 5, 2024 by pakiessling
3
Scaling sopa to run many images
#103 opened Aug 5, 2024 by josenimo
5
Incompatible coordinate transformation with cellpose segmentation result
#96 opened Jul 23, 2024 by mamyAndrianteranagna
14
snakemake executes wrong rule
#84 opened Jul 3, 2024 by xiao233333
1
Immunofluorescence Image Segmentation
#78 opened Jun 6, 2024 by suhridbuddha
1
Visium HD support
#73 opened May 30, 2024 by quentinblampey
sdata object has no cellpose or baysor boundaries
#64 opened May 13, 2024 by altunbulakli
18
Add nextflow pipeline enhancement New feature or request help wanted Extra attention is needed
#7 opened Dec 1, 2023 by quentinblampey
2
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