Initial commit

.classpath

@@ -0,0 +1,30 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry kind="src" path="src"/>
+	<classpathentry kind="src" path="test-src"/>
+	<classpathentry kind="lib" path="lib/apache/commons-codec-1.3.jar"/>
+	<classpathentry kind="lib" path="lib/apache/commons-configuration-1.6.jar"/>
+	<classpathentry kind="lib" path="lib/apache/commons-lang-2.4.jar" sourcepath="lib/apache/commons-lang-2.4-sources.jar"/>
+	<classpathentry kind="lib" path="lib/apache/commons-logging-1.1.1.jar"/>
+	<classpathentry kind="lib" path="lib/apache/commons-logging-api-1.0.4.jar"/>
+	<classpathentry kind="lib" path="lib/apache/httpclient-4.1.1.jar"/>
+	<classpathentry kind="lib" path="lib/apache/httpcore-4.1.jar"/>
+	<classpathentry kind="lib" path="lib/hadoop/1.0.0/hadoop-core-1.0.0.jar"/>
+	<classpathentry kind="lib" path="lib/junit/junit-4.11.jar" sourcepath="lib/junit/junit-4.11-sources.jar"/>
+	<classpathentry kind="lib" path="lib/sigar/sigar.jar">
+		<attributes>
+			<attribute name="org.eclipse.jdt.launching.CLASSPATH_ATTR_LIBRARY_PATH_ENTRY" value="hexbase/lib/binlib"/>
+		</attributes>
+	</classpathentry>
+	<classpathentry kind="lib" path="lib/apache/guava-12.0.1.jar" sourcepath="lib/apache/guava-12.0.1-sources.jar"/>
+	<classpathentry kind="lib" path="lib/gson/gson-2.2.2.jar" sourcepath="lib/gson/gson-2.2.2-sources.jar"/>
+	<classpathentry kind="lib" path="lib/poi/poi-3.8-20120326.jar" sourcepath="lib/poi/poi-3.8-sources.jar"/>
+	<classpathentry kind="lib" path="lib/poi/poi-ooxml-3.8-20120326.jar"/>
+	<classpathentry kind="lib" path="lib/poi/poi-ooxml-schemas-3.8-20120326.jar"/>
+	<classpathentry kind="lib" path="lib/trove/trove-3.0.3.jar"/>
+	<classpathentry kind="lib" path="lib/s3/aws-java-sdk-1.3.27.jar" sourcepath="lib/s3/aws-java-sdk-1.3.27-sources.jar"/>
+	<classpathentry kind="lib" path="lib/jama/Jama.jar"/>
+	<classpathentry kind="lib" path="lib/javassist.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="output" path="build/classes"/>
+</classpath>

.gitattributes

@@ -0,0 +1,4 @@
+*.java text eol=lf
+*.py text eol=lf
+*.sh text eol=lf
+.git* text eol=lf

.gitignore

@@ -0,0 +1,27 @@
+*.class
+*.hprof
+*.pyc
+*.swp
+*_*.data
+*_*.data
+*hs_err_pid*
+*stdout.txt
+*~
+bin/
+binlib
+build
+flatfile*
+h2o_work.xml
+ice
+lib/h2o_core.jar
+po.*
+pytest_flatfile-*
+sandbox
+dist/
+build/
+nbproject/
+nbbuild.xml
+TAGS
+build.local.conf
+/AwsCredentials.properties
+private/

.project

@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>hexbase</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.python.pydev.PyDevBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+		<nature>org.python.pydev.pythonNature</nature>
+	</natures>
+</projectDescription>

.pydevproject

@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<?eclipse-pydev version="1.0"?><pydev_project>
+<pydev_property name="org.python.pydev.PYTHON_PROJECT_INTERPRETER">Default</pydev_property>
+<pydev_property name="org.python.pydev.PYTHON_PROJECT_VERSION">python 2.7</pydev_property>
+</pydev_project>

.settings/org.eclipse.core.resources.prefs

@@ -0,0 +1,3 @@
+eclipse.preferences.version=1
+encoding//src/water/api/Timeline.java=UTF-8
+encoding//src/water/parser/DParseTask.java=UTF-8

.settings/org.eclipse.jdt.ui.prefs

@@ -0,0 +1,62 @@
+eclipse.preferences.version=1
+editor_save_participant_org.eclipse.jdt.ui.postsavelistener.cleanup=true
+formatter_profile=_0xdata
+formatter_settings_version=12
+org.eclipse.jdt.ui.ignorelowercasenames=true
+org.eclipse.jdt.ui.importorder=java;javax;org;com;
+org.eclipse.jdt.ui.javadoc=false
+org.eclipse.jdt.ui.ondemandthreshold=3
+org.eclipse.jdt.ui.staticondemandthreshold=3
+org.eclipse.jdt.ui.text.custom_code_templates=<?xml version\="1.0" encoding\="UTF-8" standalone\="no"?><templates><template autoinsert\="true" context\="gettercomment_context" deleted\="false" description\="Comment for getter method" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.gettercomment" name\="gettercomment">/**\n * @return the ${bare_field_name}\n */</template><template autoinsert\="true" context\="settercomment_context" deleted\="false" description\="Comment for setter method" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.settercomment" name\="settercomment">/**\n * @param ${param} the ${bare_field_name} to set\n */</template><template autoinsert\="true" context\="constructorcomment_context" deleted\="false" description\="Comment for created constructors" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.constructorcomment" name\="constructorcomment">/**\n * ${tags}\n */</template><template autoinsert\="true" context\="filecomment_context" deleted\="false" description\="Comment for created Java files" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.filecomment" name\="filecomment">/**\n * \n */</template><template autoinsert\="true" context\="typecomment_context" deleted\="false" description\="Comment for created types" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.typecomment" name\="typecomment">/**\n * @author ${user}\n *\n * ${tags}\n */</template><template autoinsert\="true" context\="fieldcomment_context" deleted\="false" description\="Comment for fields" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.fieldcomment" name\="fieldcomment">/**\n * \n */</template><template autoinsert\="true" context\="methodcomment_context" deleted\="false" description\="Comment for non-overriding methods" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.methodcomment" name\="methodcomment">/**\n * ${tags}\n */</template><template autoinsert\="true" context\="overridecomment_context" deleted\="false" description\="Comment for overriding methods" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.overridecomment" name\="overridecomment">/* (non-Javadoc)\n * ${see_to_overridden}\n */</template><template autoinsert\="true" context\="delegatecomment_context" deleted\="false" description\="Comment for delegate methods" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.delegatecomment" name\="delegatecomment">/**\n * ${tags}\n * ${see_to_target}\n */</template><template autoinsert\="true" context\="newtype_context" deleted\="false" description\="Newly created files" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.newtype" name\="newtype">${filecomment}\n${package_declaration}\n\n${typecomment}\n${type_declaration}</template><template autoinsert\="true" context\="classbody_context" deleted\="false" description\="Code in new class type bodies" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.classbody" name\="classbody">\n</template><template autoinsert\="true" context\="interfacebody_context" deleted\="false" description\="Code in new interface type bodies" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.interfacebody" name\="interfacebody">\n</template><template autoinsert\="true" context\="enumbody_context" deleted\="false" description\="Code in new enum type bodies" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.enumbody" name\="enumbody">\n</template><template autoinsert\="true" context\="annotationbody_context" deleted\="false" description\="Code in new annotation type bodies" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.annotationbody" name\="annotationbody">\n</template><template autoinsert\="false" context\="catchblock_context" deleted\="false" description\="Code in new catch blocks" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.catchblock" name\="catchblock">// ${todo} Auto-generated catch block\nthrow new RuntimeException(${exception_var});\n</template><template autoinsert\="false" context\="methodbody_context" deleted\="false" description\="Code in created method stubs" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.methodbody" name\="methodbody">throw new RuntimeException("${todo} Auto-generated method stub");</template><template autoinsert\="true" context\="constructorbody_context" deleted\="false" description\="Code in created constructor stubs" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.constructorbody" name\="constructorbody">${body_statement}\n// ${todo} Auto-generated constructor stub</template><template autoinsert\="true" context\="getterbody_context" deleted\="false" description\="Code in created getters" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.getterbody" name\="getterbody">return ${field};</template><template autoinsert\="true" context\="setterbody_context" deleted\="false" description\="Code in created setters" enabled\="true" id\="org.eclipse.jdt.ui.text.codetemplates.setterbody" name\="setterbody">${field} \= ${param};</template></templates>
+sp_cleanup.add_default_serial_version_id=true
+sp_cleanup.add_generated_serial_version_id=false
+sp_cleanup.add_missing_annotations=false
+sp_cleanup.add_missing_deprecated_annotations=true
+sp_cleanup.add_missing_methods=false
+sp_cleanup.add_missing_nls_tags=false
+sp_cleanup.add_missing_override_annotations=true
+sp_cleanup.add_missing_override_annotations_interface_methods=true
+sp_cleanup.add_serial_version_id=false
+sp_cleanup.always_use_blocks=true
+sp_cleanup.always_use_parentheses_in_expressions=false
+sp_cleanup.always_use_this_for_non_static_field_access=false
+sp_cleanup.always_use_this_for_non_static_method_access=false
+sp_cleanup.convert_to_enhanced_for_loop=false
+sp_cleanup.correct_indentation=false
+sp_cleanup.format_source_code=false
+sp_cleanup.format_source_code_changes_only=false
+sp_cleanup.make_local_variable_final=false
+sp_cleanup.make_parameters_final=false
+sp_cleanup.make_private_fields_final=true
+sp_cleanup.make_type_abstract_if_missing_method=false
+sp_cleanup.make_variable_declarations_final=false
+sp_cleanup.never_use_blocks=false
+sp_cleanup.never_use_parentheses_in_expressions=true
+sp_cleanup.on_save_use_additional_actions=true
+sp_cleanup.organize_imports=false
+sp_cleanup.qualify_static_field_accesses_with_declaring_class=false
+sp_cleanup.qualify_static_member_accesses_through_instances_with_declaring_class=true
+sp_cleanup.qualify_static_member_accesses_through_subtypes_with_declaring_class=true
+sp_cleanup.qualify_static_member_accesses_with_declaring_class=false
+sp_cleanup.qualify_static_method_accesses_with_declaring_class=false
+sp_cleanup.remove_private_constructors=true
+sp_cleanup.remove_trailing_whitespaces=true
+sp_cleanup.remove_trailing_whitespaces_all=true
+sp_cleanup.remove_trailing_whitespaces_ignore_empty=false
+sp_cleanup.remove_unnecessary_casts=false
+sp_cleanup.remove_unnecessary_nls_tags=false
+sp_cleanup.remove_unused_imports=false
+sp_cleanup.remove_unused_local_variables=false
+sp_cleanup.remove_unused_private_fields=true
+sp_cleanup.remove_unused_private_members=false
+sp_cleanup.remove_unused_private_methods=true
+sp_cleanup.remove_unused_private_types=true
+sp_cleanup.sort_members=false
+sp_cleanup.sort_members_all=false
+sp_cleanup.use_blocks=false
+sp_cleanup.use_blocks_only_for_return_and_throw=false
+sp_cleanup.use_parentheses_in_expressions=false
+sp_cleanup.use_this_for_non_static_field_access=false
+sp_cleanup.use_this_for_non_static_field_access_only_if_necessary=true
+sp_cleanup.use_this_for_non_static_method_access=false
+sp_cleanup.use_this_for_non_static_method_access_only_if_necessary=true

CHANGES.txt

@@ -0,0 +1,7 @@
+
+1.0
+--------------------
+ * Simplify ValueVector
+ * NIO for communication between nodes
+ * Newer simpler web-api via single JSON
+ * HEX: GLM, RandomForest, LinearRegression, covariance

Hexbase.iml

@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="JAVA_MODULE" version="4">
+  <component name="NewModuleRootManager" inherit-compiler-output="true">
+    <exclude-output />
+    <content url="file://$MODULE_DIR$">
+      <sourceFolder url="file://$MODULE_DIR$/src" isTestSource="false" />
+      <sourceFolder url="file://$MODULE_DIR$" isTestSource="true" />
+      <sourceFolder url="file://$MODULE_DIR$/tests" isTestSource="true" />
+    </content>
+    <orderEntry type="inheritedJdk" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+</module>
+