add VLType and CompoundType, commit complex compound type to file #507
Workflow file for this run
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name: CI | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
release: | |
types: | |
- created | |
workflow_dispatch: | |
jobs: | |
lint: | |
name: lint and style checks | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install black ruff | |
- name: Black style check | |
run: | | |
black --check . | |
- name: Lint with ruff | |
run: | | |
ruff . | |
build_0: | |
name: h5py3 tests | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.9", "3.10", "3.11"] | |
h5py-version: ["3.8", "3.9", "3.10"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: h5netcdf-tests | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-h5py${{matrix.h5py_version}}-${{env.TODAY}}" | |
create-args: >- | |
python=${{ matrix.python-version }} | |
pip | |
pytest | |
wheel | |
h5py=${{ matrix.h5py-version }} | |
netCDF4 | |
- name: Install h5netcdf | |
run: | | |
python -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv | |
- name: Test with pytest | |
run: | | |
pytest -v --durations=0 h5netcdf/tests/ | |
build_1: | |
name: h5py3/h5pyd tests | |
runs-on: ubuntu-latest | |
continue-on-error: true | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.11"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: h5netcdf-tests | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-h5pyd-${{env.TODAY}}" | |
create-args: >- | |
python=${{ matrix.python-version }} | |
pip | |
pytest | |
wheel | |
h5py | |
netCDF4 | |
- name: Install h5netcdf | |
run: | | |
python -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv | |
python -m pip install git+https://github.com/HDFGroup/hsds.git@v0.8.0 | |
python -m pip install git+https://github.com/HDFGroup/h5pyd.git | |
- name: Test with pytest | |
run: | | |
pytest -v --durations=0 h5netcdf/tests/ | |
build_2: | |
name: netCDF4 nightly test | |
runs-on: ubuntu-latest | |
continue-on-error: true | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.11"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: h5netcdf-tests | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-netcdf4_nightly-${{env.TODAY}}" | |
create-args: >- | |
python=${{ matrix.python-version }} | |
pip | |
pytest | |
wheel | |
h5py | |
libnetcdf | |
cftime | |
- name: Install netCDF4 from GitHub | |
run: python -m pip install git+https://github.com/Unidata/netcdf4-python | |
- name: Install h5netcdf | |
run: | | |
python -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv | |
- name: Test with pytest | |
run: | | |
pytest -v --durations=0 h5netcdf/tests/ | |
build_3: | |
name: xarray nightly test | |
runs-on: ubuntu-latest | |
continue-on-error: true | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.11"] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
repository: "pydata/xarray" | |
fetch-depth: 0 | |
- name: Install micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: h5netcdf-tests | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-xarray_nightly-${{env.TODAY}}" | |
create-args: >- | |
python=${{ matrix.python-version }} | |
dask | |
h5py | |
netCDF4 | |
packaging | |
pandas | |
pip | |
pytest | |
wheel | |
- name: Install xarray | |
run: | | |
python -m pip install --no-deps . | |
- name: Install h5netcdf | |
run: | | |
python -m pip install --no-deps --ignore-installed --no-cache-dir -vvv \ | |
git+https://github.com/h5netcdf/h5netcdf.git@${{ github.ref }} | |
- name: Test with pytest | |
run: | | |
python -m pytest -v --durations=0 -k "H5NetCDF" | |
sphinx_doc: | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Install micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: h5netcdf-docs | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-docs-${{env.TODAY}}" | |
create-args: >- | |
python=3.11 | |
pip | |
pytest | |
wheel | |
h5py | |
netCDF4 | |
sphinx | |
sphinx-book-theme>=0.3.2 | |
- name: Install h5netcdf | |
run: | | |
python -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv | |
- name: Build HTML | |
run: | | |
cd doc | |
make html | |
- name: Upload artifacts | |
uses: actions/upload-artifact@v4 | |
with: | |
name: html-doc | |
path: doc/_build/html | |
- name: Deploy | |
uses: peaceiris/actions-gh-pages@v3 | |
# this uploads only on releases | |
if: github.event_name == 'release' | |
with: | |
github_token: ${{ secrets.GITHUB_TOKEN }} | |
publish_dir: doc/_build/html | |
upload-pypi: | |
if: github.event_name == 'release' | |
needs: [lint, build_0, sphinx_doc] | |
name: deploy to pypi | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install build setuptools wheel twine | |
- name: Package and Upload | |
env: | |
TWINE_USERNAME: __token__ | |
TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} | |
run: | | |
python -m build | |
twine upload dist/* |