[vds] fix impute_sex_chromosome_ploidy docs #11452
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patrick-schultz
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Mar 3, 2022
hail/python/hail/vds/methods.py
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| - ``x_ploidy`` (*float64*): Estimated ploidy on X chromosome. Equal to ``x_mean_dp / autosomal_mean_dp * 2``. | ||
| - ``y_mean_dp`` (*float64*): Mean depth on calling intervals on chromosome. | ||
| - ``y_ploidy`` (*float64*): Estimated ploidy on Y chromosome. Equal to ``2 * autosomal_mean_dp / y_mean_dp``. | ||
| - ``y_ploidy`` (*float64*): Estimated ploidy on Y chromosome. Equal to ``y_mean_db / autosomal_mean_dp * 2``. |
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This associates as (x_mean_dp / autosomal_mean_dp) * 2, right? Could you write it 2 * x_mean_dp / autosomal_mean_dp so there's no ambiguity?
the actual expression for x/y ploidy is:
```python3
per_sample = coverage.transmute_cols(autosomal_mean_dp=auto_dp,
x_mean_dp=x_dp,
x_ploidy=2 * x_dp / auto_dp,
y_mean_dp=y_dp,
y_ploidy=2 * y_dp / auto_dp)
```
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patrick-schultz
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the actual expression for x/y ploidy is: