upgrade sbt, plugin

build.sbt

@@ -1,36 +1,31 @@
-organization := "org.hammerlab.adam"
-
+group("org.hammerlab.adam")
 name := "core"
-
-version := "0.23.2"
+r"0.23.2"
+github.repo("adam")
 
 addSparkDeps
 publishTestJar
-enableScalariform
 
-testDeps += ("org.mockito" ^ "mockito-core") ^ "2.6.4"
-
-deps ++= Seq(
+dep(
   bdg_formats,
   bdg_utils_cli ^ "0.3.0",
   bdg_utils_intervalrdd,
   bdg_utils_io,
   bdg_utils_metrics,
-  bdg_utils_misc,
+  bdg_utils_misc +testtest,
   commons_io,
-  hadoop_bam ^ "7.9.0",
+  seqdoop_hadoop_bam ^ "7.9.0",
   htsjdk,
   loci ^ "2.0.1",
   log4j,
   parquet_avro,
   paths ^ "1.2.0",
+  reference % "1.4.0" - htsjdk +testtest,
   spark_util ^ "1.2.1",
   "it.unimi.dsi" ^ "fastutil" ^ "6.6.5",
   "org.apache.avro" ^ "avro" ^ "1.8.1",
   "org.apache.httpcomponents" ^ "httpclient" ^ "4.5.2",
   ("org.apache.parquet" ^ "parquet-scala_2.10" ^ "1.8.1") - scala_lang
 )
 
-compileAndTestDeps += (reference % "1.4.0" - htsjdk)
-
-testTestDeps += bdg_utils_misc
+testDeps += "org.mockito" ^ "mockito-core" ^ "2.6.4"

project/build.properties

@@ -1 +1 @@
-sbt.version=0.13.13
+sbt.version=1.0.4

project/plugins.sbt

@@ -1 +1 @@
-addSbtPlugin("org.hammerlab" % "sbt-parent" % "3.1.0")
+addSbtPlugin("org.hammerlab.sbt" % "base" % "4.0.0")