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Celldom Experiment Analysis

For each new imaging experiment, this repo should contain:

  • A folder in experiments named by the experiment (e.g. 20180217-G1-K562-control-01)
  • A README.md file at experiments/$name/README.md with an overview of the experiment
  • An experiments/$name/config folder containing any related configuration files (typically just experiment.yaml)
  • An experiments/$name/notebook folder containing notebooks with commands used to process the experiment or any related analysis
  • An experiments/$name/data folder containing any accompanying data or analysis output files (e.g. manual counting results for comparison to automated results or csv exports of apartment growth rates)
  • An experiments/$name/media folder containing an figures, videos, flowcharts, or other visualization files

Any other shared resources like chip or cytometer configurations should remain in the core Celldom repository.

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