For each new imaging experiment, this repo should contain:
- A folder in
experiments
named by the experiment (e.g.20180217-G1-K562-control-01
) - A
README.md
file atexperiments/$name/README.md
with an overview of the experiment - An
experiments/$name/config
folder containing any related configuration files (typically justexperiment.yaml
) - An
experiments/$name/notebook
folder containing notebooks with commands used to process the experiment or any related analysis - An
experiments/$name/data
folder containing any accompanying data or analysis output files (e.g. manual counting results for comparison to automated results or csv exports of apartment growth rates) - An
experiments/$name/media
folder containing an figures, videos, flowcharts, or other visualization files
Any other shared resources like chip or cytometer configurations should remain in the core Celldom repository.