add exonic_frameshift_variant_count

hammerlab · Aug 2, 2017 · cc59d02 · cc59d02
1 parent 142b535
commit cc59d02
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/cohorts/functions.py b/cohorts/functions.py
@@ -181,6 +181,13 @@ def count_filter_fn(filterable_effect, **kwargs):
     filterable_effect_function=lambda filterable_effect: (
         isinstance(filterable_effect.effect, Exonic)))
 
+exonic_frameshift_variant_count = count_effects_function_builder(
+    "exonic_frameshift_variant_count",
+    only_nonsynonymous=False,
+    filterable_effect_function=lambda filterable_effect: (
+        isinstance(filterable_effect.effect, Exonic) and
+        isinstance(filterable_effect.effect, FrameShift)))
+
 exonic_snv_count = count_effects_function_builder(
     "exonic_snv_count",
     only_nonsynonymous=False,