make genotype_extractor work even if varcode fails

hammerlab · Sep 18, 2015 · 33f9232 · 33f9232
1 parent eb8a7ab
commit 33f9232
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/workers/shared.py b/workers/shared.py
@@ -92,6 +92,8 @@ def guess_ensembl_release(filepath):
         release = varcode.load_vcf(filepath)[0].ensembl.release
     except ValueError:  # no guesses from varcode, return default
         release = config.ENSEMBL_RELEASE
+    except Exception:  # varcode cannot handle this one, so go w/ default
+        release = config.ENSEMBL_RELEASE
     finally:
         return release