Merge pull request #23 from ryan-williams/ug

bump deps, rm dead code
hammerlab · Jan 22, 2018 · c1ad839 · c1ad839
2 parents 8f791a1 + c5de266
commit c1ad839
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Showing 5 changed files with 9 additions and 14 deletions.
diff --git a/.travis.yml b/.travis.yml
@@ -5,17 +5,17 @@ jdk:
   - oraclejdk8
 
 scala:
-  - 2.11.8
+  - 2.11.12
 
-script: sbt ++$TRAVIS_SCALA_VERSION clean test
+script: sbt ++$TRAVIS_SCALA_VERSION clean coverageTest
 
 cache:
   directories:
   - $HOME/.ivy2/cache
   - $HOME/.sbt/boot/
   - $HOME/.zinc
 
-after_success: sbt ++$TRAVIS_SCALA_VERSION travis-report
+after_success: sbt ++$TRAVIS_SCALA_VERSION travisReport
 
 before_cache:
   # Tricks to avoid unnecessary cache updates

diff --git a/build.sbt b/build.sbt
@@ -1,4 +1,4 @@
-organization := "org.hammerlab.genomics"
+group("org.hammerlab.genomics")
 name := "loci"
 
 github.repo("genomic-loci")
@@ -7,13 +7,13 @@ addSparkDeps
 
 dep(
   args4j,
-  args4s       % "1.3.0",
+  args4s       % "1.3.1",
   htsjdk,
   iterators    % "2.0.0",
   paths        % "1.4.0",
-  reference    % "1.4.1" + testtest,
+  reference    % "1.4.2" + testtest,
   scalautils,
-  spark_util   % "2.0.1",
+  spark_util   % "2.0.2",
   string_utils % "1.2.0"
 )
 

diff --git a/project/build.properties b/project/build.properties
@@ -1 +1 @@
-sbt.version=1.0.4
+sbt.version=1.1.0
diff --git a/project/plugins.sbt b/project/plugins.sbt
@@ -1 +1 @@
-addSbtPlugin("org.hammerlab.sbt" % "base" % "4.1.0")
+addSbtPlugin("org.hammerlab.sbt" % "base" % "4.2.0")
diff --git a/src/main/scala/org/hammerlab/genomics/loci/set/Serializer.scala b/src/main/scala/org/hammerlab/genomics/loci/set/Serializer.scala