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use test alias #24

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merged 1 commit into from Mar 14, 2018
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23 changes: 13 additions & 10 deletions build.sbt
@@ -1,19 +1,20 @@
group("org.hammerlab.genomics")
name := "loci"

github.repo("genomic-loci")
v"2.0.3"

addSparkDeps

import genomics.reference

dep(
args4j,
args4s % "1.3.1",
htsjdk,
iterators % "2.0.0",
paths % "1.4.0",
reference % "1.4.2" + testtest,
scalautils,
spark_util % "2.0.2",
args4j,
args4s % "1.3.1",
htsjdk,
iterators % "2.1.0",
paths % "1.5.0",
reference % "1.4.3" + testtest,
scalautils,
spark_util % "2.0.3",
string_utils % "1.2.0"
)

Expand All @@ -28,3 +29,5 @@ shadeRenames += "com.google.thirdparty.**" → "org.hammerlab.guava.@1"
publishThinShadedJar

publishTestJar

github.repo("genomic-loci")
2 changes: 1 addition & 1 deletion project/build.properties
@@ -1 +1 @@
sbt.version=1.1.0
sbt.version=1.1.1
2 changes: 1 addition & 1 deletion project/plugins.sbt
@@ -1 +1 @@
addSbtPlugin("org.hammerlab.sbt" % "base" % "4.2.0")
addSbtPlugin("org.hammerlab.sbt" % "base" % "4.4.2")
@@ -1,9 +1,9 @@
package org.hammerlab.genomics.loci.iterator

import hammerlab.test.Suite
import org.hammerlab.genomics.reference.test.IntervalsUtil
import org.hammerlab.genomics.reference.test.LociConversions._
import org.hammerlab.genomics.reference.{ Interval, Locus }
import org.hammerlab.test.Suite

class SkippableLociIteratorSuite
extends Suite
Expand Down
@@ -1,10 +1,10 @@
package org.hammerlab.genomics.loci.map

import com.google.common.collect.{ ImmutableRangeMap, Range }
import hammerlab.test.Suite
import org.hammerlab.genomics.reference.Locus
import org.hammerlab.genomics.reference.test.{ ClearContigNames, ContigNameConversions }
import org.hammerlab.genomics.reference.test.LociConversions._
import org.hammerlab.test.Suite
import org.hammerlab.genomics.reference.test.{ ClearContigNames, ContigNameConversions }

class ContigSuite
extends Suite
Expand Down
@@ -1,10 +1,10 @@
package org.hammerlab.genomics.loci.map

import hammerlab.test.Suite
import org.hammerlab.genomics.loci.set.test.LociSetUtil
import org.hammerlab.genomics.reference.Interval
import org.hammerlab.genomics.reference.test.LociConversions.intToLocus
import org.hammerlab.genomics.reference.test.{ ClearContigNames, ContigNameConversions }
import org.hammerlab.test.Suite

class LociMapSuite
extends Suite
Expand Down
@@ -1,9 +1,9 @@
package org.hammerlab.genomics.loci.parsing

import hammerlab.test.Suite
import org.hammerlab.genomics.loci.set.test.LociSetUtil
import org.hammerlab.genomics.reference.test.ClearContigNames
import org.hammerlab.genomics.reference.test.LociConversions.intToLocus
import org.hammerlab.test.Suite
import org.hammerlab.test.resources.File

class ParsedLociSuite
Expand Down
@@ -1,9 +1,9 @@
package org.hammerlab.genomics.loci.set

import hammerlab.test.Suite
import org.hammerlab.genomics.loci.iterator.LociIterator
import org.hammerlab.genomics.reference.Interval
import org.hammerlab.genomics.reference.test.LociConversions._
import org.hammerlab.test.Suite

class LociIteratorSuite extends Suite {

Expand Down
Expand Up @@ -109,7 +109,7 @@ object Helpers {

/**
* Isolate this method in its own object because otherwise ClosureCleaner will attempt to Java-serialize the enclosing
* [[org.hammerlab.test.Suite]], which errors due to a non-serializable [[org.scalatest.Assertions]].AssertionsHelper
* [[hammerlab.test.Suite]], which errors due to a non-serializable [[org.scalatest.Assertions]].AssertionsHelper
* member inherited from [[org.scalatest.FunSuite]]. See https://github.com/scalatest/scalatest/issues/1013.
*/
def mapTask(implicit factory: Factory) =
Expand Down