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31 Open 4 Closed
31 Open 4 Closed
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Issues list

Decide how to package infino for release in user-friendly way
#52 opened Nov 5, 2017 by maximz
Investigate RCC cohort that has bulk RNA-seq of TME and flow sorting data
#44 opened Aug 24, 2017 by maximz
1
Remove data leakage in synthetic mixture tests
#41 opened Apr 28, 2017 by maximz Model improvements
@maximz
Try variational inference models
#40 opened Apr 28, 2017 by maximz Model improvements
@e5c
Plan how to model stromal and tumor cell content in mixtures
#39 opened Apr 28, 2017 by maximz Model improvements
Abstract for Penn math/bio symposium
#37 opened Apr 3, 2017 by e5c
Modify MSOS data.py to pull data from nfs-pool, not the g bucket
#36 opened Mar 17, 2017 by e5c
Create setup.py, fix requirements.txt bug
#35 opened Mar 15, 2017 by e5c
@e5c
Remove kernelspec from ipynbs in master branch
#34 opened Mar 15, 2017 by e5c
@e5c
Review Dana Pe'er's model for scRNA seq using BISCUIT
#33 opened Mar 7, 2017 by jburos
1
model5 negative parameter error bug
#32 opened Feb 23, 2017 by e5c
7
strange pystan error when running model7
#31 opened Feb 22, 2017 by jburos
Error message when running model7 with no cell-level features bug
#30 opened Feb 22, 2017 by jburos
1
compare single-origin model inference to known tool output
#28 opened Feb 3, 2017 by jburos
add adjustment for sample source (batch and/or project)
#27 opened Feb 3, 2017 by jburos Model improvements
execute all notebooks in single origin samples
#26 opened Feb 3, 2017 by jburos
1
simulate data according to our model
#24 opened Feb 3, 2017 by jburos Model improvements
3
Ketrewize Stan model training
#23 opened Jan 30, 2017 by e5c
Schedule formal model review
#22 opened Jan 30, 2017 by jburos
2
Document current mixture model
#21 opened Jan 30, 2017 by jburos
Evaluate sequencing vendors for RNA isolated at MUSC and Sinai
#20 opened Dec 21, 2016 by hammer
3
Generate data at ISMMS
#19 opened Dec 19, 2016 by hammer
2
Name for this project/tool
#18 opened Dec 18, 2016 by jburos
6
How to adjust for transcript length
#17 opened Dec 17, 2016 by hammer Model improvements
1
Try models using selected sets of genes
#16 opened Dec 17, 2016 by hammer Model improvements
2
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