Merge pull request #453 from akmorrow13/pileup

GA4GHDataSource only requests reads not in cache
hammerlab · Feb 21, 2017 · 5b7858a · 5b7858a
2 parents ae44838 + b71d626
commit 5b7858a
Showing 1 changed file with 7 additions and 1 deletion.
diff --git a/src/main/sources/GA4GHDataSource.js b/src/main/sources/GA4GHDataSource.js
@@ -70,11 +70,17 @@ function create(spec: GA4GHSpec): AlignmentDataSource {
 
     interval = expandRange(interval);
 
+    // select only intervals not yet loaded into coveredRangesß
+    var intervals = interval.complementIntervals(coveredRanges);
+
     // We "cover" the interval immediately (before the reads have arrived) to
     // prevent duplicate network requests.
     coveredRanges.push(interval);
     coveredRanges = ContigInterval.coalesce(coveredRanges);
-    fetchAlignmentsForInterval(interval, null, 1 /* first request */);
+
+    intervals.forEach(i => {
+      fetchAlignmentsForInterval(i, null, 1 /* first request */);
+    });
   }
 
   function notifyFailure(message: string) {