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Use index chunks in pileup.formats.bam #158

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merged 1 commit into from May 22, 2015
Merged

Use index chunks in pileup.formats.bam #158

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8 changes: 5 additions & 3 deletions src/BamDataSource.js
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Expand Up @@ -129,9 +129,11 @@ function create(spec: BamSpec): BamDataSource {
throw new Error(`Missing indexURL from track data: ${JSON.stringify(spec)}`);
}

// TODO: pass indexChunks, see flow issue facebook/flow#437
return createFromBamFile(new BamFile(new RemoteFile(url),
new RemoteFile(indexUrl)));
// TODO: this is overly repetitive, see flow issue facebook/flow#437
var bamFile = spec.indexChunks ?
new BamFile(new RemoteFile(url), new RemoteFile(indexUrl), spec.indexChunks) :
new BamFile(new RemoteFile(url), new RemoteFile(indexUrl));
return createFromBamFile(bamFile);
}

module.exports = {
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