Fetch alignments from BAM files using a BAI index #66
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Highlights:
uint64native
,lazyArray
) which aren't being extensively used now, but might be in the future..bam.bai.json
files) a cinch in the future.VirtualOffset
class to represent "virtual offsets" into BAM files. These pack offsets into the compressed BAM file & the inflated block into uint64s. But those are hard to work with in JS, hence a wrapper.And, of course, an implementation of the indexed lookup algorithm. I wound up basing my tests & implementation on htsjdk, which is significantly easier to follow & play with than the canonical C version.