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Add BamDataSource #79

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merged 4 commits into from
Apr 17, 2015
Merged

Add BamDataSource #79

merged 4 commits into from
Apr 17, 2015

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danvk
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@danvk danvk commented Apr 17, 2015

Like the other data sources, this manages caching and speculative fetching, and creates an immediate, synchronous view over the remote data source.

This also adds coalesce and isCoveredBy methods to Interval and ContigInterval which facilitate working with collections of intervals.

See #26

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Coverage increased (+0.03%) to 93.71% when pulling 36f3ebf on bam-source into 47f44c9 on master.

@danvk danvk mentioned this pull request Apr 17, 2015
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Coverage Status

Coverage increased (+0.03%) to 93.71% when pulling a5c6bfe on bam-source into 47f44c9 on master.

danvk added a commit that referenced this pull request Apr 17, 2015
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Merge pull request #79 from hammerlab/bam-source
a8d585f 
Add BamDataSource
@danvk danvk merged commit a8d585f into master Apr 17, 2015
@danvk danvk deleted the bam-source branch June 22, 2015 16:19
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