Minor read.bismark() improvements: #29
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- read files in parallel via mclapply() - Error if user tries to collapse-by-strand the strand-less .cov input - Strip names() from sampleNames to avoid failing strict SummarizedExperiment validity checks - Pass rmZeroCov to read.bismarkCytosineReportRaw() - Documentation and example updates
Current coverage is
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mclapply()(free speedup).covinput files (addresses https://jhu-genomics.slack.com/archives/hansen_bsseq/p1460559072000077)names()fromsampleNamesto avoid failing strict SummarizedExperiment validity checks (further tightening of https://github.com/kasperdanielhansen/bsseq/pull/16/files)rmZeroCovtoread.bismarkCytosineReportRaw()(not sure how this was overlooked)