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Allow gzipped barcode whitelist file. #127

Merged
merged 3 commits into from
Dec 7, 2022
Merged

Allow gzipped barcode whitelist file. #127

merged 3 commits into from
Dec 7, 2022

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mourisl
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@mourisl mourisl commented Dec 6, 2022

I leave the original ifstream code there in case we still need it in the future.

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@haowenz
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haowenz commented Dec 7, 2022

btw, did you test this on whitelist files in gz and normal txt formats?

@mourisl
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mourisl commented Dec 7, 2022

Yes, I have tested on uncompressed and gzipped whitelist files, and they generated the same results. I'll address the other comments you mentioned later.

@haowenz
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haowenz commented Dec 7, 2022

Thank you for adding this feature. Please bump up the version before rebase.

@haowenz
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haowenz commented Dec 7, 2022

Will this change also support loading translation table in gz format?

@mourisl
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mourisl commented Dec 7, 2022

Not yet. I can add that after the paired-end sam format.

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2 participants