ACTIN-99 Add the second orange invocation #496
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Adds a boolean to toggle the germline to somatic conversion, and the namespace. Run orange twice, once with the toggle on and once with it off.
pauldwolfe
commented
May 9, 2023
cluster/src/main/java/com/hartwig/pipeline/tertiary/orange/Orange.java
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nedleitch
approved these changes
May 11, 2023
kduyvesteyn
reviewed
May 22, 2023
cluster/src/main/java/com/hartwig/pipeline/tertiary/orange/Orange.java
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cluster/src/test/java/com/hartwig/pipeline/tertiary/orange/OrangeTest.java
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cluster/src/main/java/com/hartwig/pipeline/tertiary/orange/Orange.java
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Adds a boolean to toggle the germline to somatic conversion, and the namespace.
Run orange twice, once with the toggle on and once with it off.