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What does proteins.txt look like? #1

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huohuoxi opened this issue Jul 4, 2023 · 10 comments
Open

What does proteins.txt look like? #1

huohuoxi opened this issue Jul 4, 2023 · 10 comments

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@huohuoxi
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huohuoxi commented Jul 4, 2023

使用默认的davis数据,我先运行了main_pretraining,发现缺少.npy文件,在一番寻找之后,我发现可能先要运行scripts.py,但是在艰难地装好库之后,提示缺少proteins.txt,请问这个文件应该是什么格式的?能否提供一个能直接运行的版本?

I ran main_pretraining.py, it says it lacks a ".npy" file. Then I realized scripts.py may be run first. But the script.py lacks proteins.txt. What does the file look like? Can you provide an original file? And please upload a version of NGHNN-DTA that can run directly.

@11140321
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你好,请问你的问题解决了吗

@huohuoxi
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我后来找到这个文件,我去看了GraphDTA这篇文章的github主页。他们用了同一个数据文件,其中就有proteins.txt

@11140321
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11140321 commented Jul 18, 2023 via email

@huohuoxi
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噢噢噢,好的谢谢!请问你这个代码可以调试成功了吗?我在运行scripts.py文件时还是遇见了错误?如果方便的话可以加一下我的QQ吗?我想问问您 真的十分感谢

---Original--- From: @.> Date: Tue, Jul 18, 2023 17:27 PM To: @.>; Cc: @.@.>; Subject: Re: [hehh77/NHGNN-DTA] What does proteins.txt look like? (Issue #1) 我后来找到这个文件,我去看了GraphDTA这篇文章的github主页。他们用了同一个数据文件,其中就有proteins.txt — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

你发你的QQ吧

@11140321
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11140321 commented Jul 18, 2023 via email

@yuehua-Song666
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使用默认的davis数据,我先运行了main_pretraining,发现缺少.npy文件,在一番寻找之后,我发现可能先要运行scripts.py,但是在艰难地装好库之后,提示缺少proteins.txt,请问这个文件应该是什么格式的?能否提供一个能直接运行的版本?

I ran main_pretraining.py, it says it lacks a ".npy" file. Then I realized scripts.py may be run first. But the script.py lacks proteins.txt. What does the file look like? Can you provide an original file? And please upload a version of NGHNN-DTA that can run directly.

Hello您好,打扰了,我在安装Pconsc4包和pyGaussDCA包的时候遇到困难,查了很多方法都不太有用,可以请问下您的环境配置吗?万分感谢。

@11140321
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11140321 commented Jun 20, 2024 via email

@yuehua-Song666
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我之使用的就是davis数据集中带的的这个proteins.txt,你看你能不能使用,这个代码我也没有跑通,很抱歉。

------------------ 原始邮件 ------------------ 发件人: "hehh77/NHGNN-DTA" @.>; 发送时间: 2024年6月20日(星期四) 凌晨4:22 @.>; @.@.>; 主题: Re: [hehh77/NHGNN-DTA] What does proteins.txt look like? (Issue #1) 使用默认的davis数据,我先运行了main_pretraining,发现缺少.npy文件,在一番寻找之后,我发现可能先要运行scripts.py,但是在艰难地装好库之后,提示缺少proteins.txt,请问这个文件应该是什么格式的?能否提供一个能直接运行的版本? I ran main_pretraining.py, it says it lacks a ".npy" file. Then I realized scripts.py may be run first. But the script.py lacks proteins.txt. What does the file look like? Can you provide an original file? And please upload a version of NGHNN-DTA that can run directly. Hello您好,打扰了,我在安装Pconsc4包和pyGaussDCA包的时候遇到困难,查了很多方法都不太有用,可以请问下您的环境配置吗?万分感谢。 — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

感谢感谢我还没有到用data那一步哈哈,想知道您之前配环境有遇到问题嘛?

@11140321
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11140321 commented Jun 20, 2024 via email

@yuehua-Song666
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应该是遇到了问题,没有找到解决办法,我就没继续往下弄了。这个代码是挺久之前我看的,有的记不清楚了。

------------------ 原始邮件 ------------------ 发件人: @.>; 发送时间: 2024年6月20日(星期四) 上午10:27 收件人: @.>; 抄送: @.>; @.>; 主题: Re: [hehh77/NHGNN-DTA] What does proteins.txt look like? (Issue #1) 我之使用的就是davis数据集中带的的这个proteins.txt,你看你能不能使用,这个代码我也没有跑通,很抱歉。 … ------------------ 原始邮件 ------------------ 发件人: "hehh77/NHGNN-DTA" @.>; 发送时间: 2024年6月20日(星期四) 凌晨4:22 @.>; @.@.>; 主题: Re: [hehh77/NHGNN-DTA] What does proteins.txt look like? (Issue #1) 使用默认的davis数据,我先运行了main_pretraining,发现缺少.npy文件,在一番寻找之后,我发现可能先要运行scripts.py,但是在艰难地装好库之后,提示缺少proteins.txt,请问这个文件应该是什么格式的?能否提供一个能直接运行的版本? I ran main_pretraining.py, it says it lacks a ".npy" file. Then I realized scripts.py may be run first. But the script.py lacks proteins.txt. What does the file look like? Can you provide an original file? And please upload a version of NGHNN-DTA that can run directly. Hello您好,打扰了,我在安装Pconsc4包和pyGaussDCA包的时候遇到困难,查了很多方法都不太有用,可以请问下您的环境配置吗?万分感谢。 — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.> 感谢感谢我还没有到用data那一步哈哈,想知道您之前配环境有遇到问题嘛? — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.>
好滴好滴,太感谢啦~

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