InVivoTools a set of neurophysiology tools, forked from VanHooserTools, containing tools for visual stimulation and analysis of calcium imaging and extracellular electrophysiology data
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Calibration
Configuration
ERG
Electrophysiology
ExpDataTools
General
Histology/Allenatlasmatching
Manual
NelsonLabTools
NeuralAnalysis
NewStim3
OpticalImaging
Physiology
Shutters/parallax
TwoPhoton
Webcam
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.gitignore
LICENSE
README.md
load_invivotools.m
load_scanbox.m
startup.m
test_invivotools.m
update_invivotools.m

README.md

InVivoTools

InVivoTools is a system for journaling, analyzing and retrieving data. The Graph_db provides a flexible way to produce graphs for stored data.

The most recent version can be downloaded from https://github.com/heimel/InVivoTools

The manual can be found at: https://github.com/heimel/InVivoTools/wiki

For information on showing visual stimuli check out the manual on the NewStim package (forked from the Van Hooser lab tools) that is included with InVivoTools https://sites.google.com/site/alexanderheimel/protocols/manual-newstim-and-runexperiment

For information on microscopic image analysis, see https://sites.google.com/site/alexanderheimel/protocols/puncta-analysis-using-matlab

Maintainer: Alexander Heimel