Merge pull request #24 from pjotrp/master

yard balks on gem install bio-gem

.yardopts

@@ -0,0 +1,2 @@
+--exclude lib/bio-gem/templates/lib/plugin.rb 
+--exclude lib/bio-gem/templates/lib/bioruby-plugin.rb

Gemfile

@@ -2,7 +2,7 @@ source "http://rubygems.org"
 # Add dependencies required to use your gem here.
 # Example:
 #   gem "activesupport", ">= 2.3.5"
-gem "bundler", "~> 1.0.21"
+gem "bundler", ">= 1.0.21"
 gem "jeweler"
 gem "rdoc"
 

Gemfile.lock

@@ -23,7 +23,7 @@ PLATFORMS
   ruby
 
 DEPENDENCIES
-  bundler (~> 1.0.21)
+  bundler (>= 1.0.21)
   jeweler
   rdoc
   shoulda

bio-gem.gemspec

@@ -9,7 +9,7 @@ Gem::Specification.new do |s|
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Raoul J.P. Bonnal", "Pjotr Prins"]
-  s.date = "2012-04-07"
+  s.date = "2012-04-18"
   s.description = "Biogem is a software generator for those bioinformaticans who want to start coding an application or a library for using/extending BioRuby core library and sharing it through rubygems.org .\n  The basic idea is to simplify and promote a modular approach to bioinformatics software development"
   s.email = "ilpuccio.febo@gmail.com"
   s.executables = ["biogem"]
@@ -21,6 +21,7 @@ Gem::Specification.new do |s|
   s.files = [
     ".document",
     ".travis.yml",
+    ".yardopts",
     "Gemfile",
     "Gemfile.lock",
     "LICENSE.txt",
@@ -78,18 +79,18 @@ Gem::Specification.new do |s|
     s.specification_version = 3
 
     if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
-      s.add_runtime_dependency(%q<bundler>, ["~> 1.0.21"])
+      s.add_runtime_dependency(%q<bundler>, [">= 1.0.21"])
       s.add_runtime_dependency(%q<jeweler>, [">= 0"])
       s.add_runtime_dependency(%q<rdoc>, [">= 0"])
       s.add_development_dependency(%q<shoulda>, [">= 0"])
     else
-      s.add_dependency(%q<bundler>, ["~> 1.0.21"])
+      s.add_dependency(%q<bundler>, [">= 1.0.21"])
       s.add_dependency(%q<jeweler>, [">= 0"])
       s.add_dependency(%q<rdoc>, [">= 0"])
       s.add_dependency(%q<shoulda>, [">= 0"])
     end
   else
-    s.add_dependency(%q<bundler>, ["~> 1.0.21"])
+    s.add_dependency(%q<bundler>, [">= 1.0.21"])
     s.add_dependency(%q<jeweler>, [">= 0"])
     s.add_dependency(%q<rdoc>, [">= 0"])
     s.add_dependency(%q<shoulda>, [">= 0"])