Use Git LFS to store large binary files

hetio · Nov 2, 2018 · 23f6117 · 23f6117
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diff --git a/.gitattributes b/.gitattributes
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+*.bz2 filter=lfs diff=lfs merge=lfs -text
+*.gz filter=lfs diff=lfs merge=lfs -text
+*.xz filter=lfs diff=lfs merge=lfs -text
+*.zip filter=lfs diff=lfs merge=lfs -text
diff --git a/README.md b/README.md
@@ -25,6 +25,12 @@ The JSON and Neo4j formats contain node and edge properties, which are missing f
 
 We've created five permuted derivatives of Hetionet. The [permutation](https://doi.org/10.15363/thinklab.d136 "Permuting hetnets and implementing randomized edge swaps in cypher · Thinklab discussion") randomizes edges while preserving node degree. Permuted hetnets are available in [`hetnet/permuted`](hetnet/permuted) in JSON and Neo4j 2.3 formats. Relationship properties are omitted from the permuted hetnets.
 
+### Cloning
+
+Large files in this repository are stored using [Git LFS](https://git-lfs.github.com/).
+If cloning this repository, please make sure that Git LFS is installed on your system.
+Otherwise, git will checkout text pointers for large files rather than the large files themselves!
+
 ## Network Description
 
 [`describe`](describe) contains summary statistics on the hetnet. See [`describe/nodes/metanodes.tsv`](describe/nodes/metanodes.tsv) for details on the node types in the hetnet. See [`describe/edges/metaedges.tsv`](describe/edges/metaedges.tsv) for details on the edge types.

diff --git a/hetnet/json/hetionet-v1.0.json.bz2 b/hetnet/json/hetionet-v1.0.json.bz2
diff --git a/hetnet/neo4j/hetionet-v1.0.db.tar.bz2 b/hetnet/neo4j/hetionet-v1.0.db.tar.bz2
diff --git a/hetnet/permuted/json/hetionet-v1.0-perm-1.json.bz2 b/hetnet/permuted/json/hetionet-v1.0-perm-1.json.bz2
diff --git a/hetnet/permuted/json/hetionet-v1.0-perm-2.json.bz2 b/hetnet/permuted/json/hetionet-v1.0-perm-2.json.bz2
diff --git a/hetnet/permuted/json/hetionet-v1.0-perm-3.json.bz2 b/hetnet/permuted/json/hetionet-v1.0-perm-3.json.bz2
diff --git a/hetnet/permuted/json/hetionet-v1.0-perm-4.json.bz2 b/hetnet/permuted/json/hetionet-v1.0-perm-4.json.bz2
diff --git a/hetnet/permuted/json/hetionet-v1.0-perm-5.json.bz2 b/hetnet/permuted/json/hetionet-v1.0-perm-5.json.bz2
diff --git a/hetnet/tsv/hetionet-v1.0-edges.sif.gz b/hetnet/tsv/hetionet-v1.0-edges.sif.gz