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communityEcol.html
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<!DOCTYPE HTML>
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<title>Ecological Analysis of Communities</title>
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<h2>Ecological Analysis of Communities</h2>
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<p>This page accompanies the workshop 'Advanced topics in R: Ecological Analysis of Communities'. See below for learning materials, including the Chapter 'Ecological Analysis of Communities', the Solutions to exercises, and the datasets used throughout the chapter.</p>
<h3>Web resources</h3>
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<ul>
<li><a href="docs/Rnotes_main.pdf" target="_blank">The manual to the R course (which can be accessed via this direct link)</a> - lots of content there is useful as general background.
</li>
<li>CRAN Task Views (collections of relevant packages): <a href="https://cran.r-project.org/web/views/Multivariate.html" target="_blank">Multivariate</a>, <a href="https://cran.r-project.org/web/views/Environmetrics.html" target="_blank">Environmetrics</a>, <a href="https://cran.r-project.org/web/views/Spatial.html" target="_blank">Spatial</a>.</li>
<li><a href="http://ordination.okstate.edu/" target="_blank">Ordination Methods for Ecologists</a></li>
<li><a href="http://mb3is.megx.net/gustame/home" target="_blank">Guide to Statistical Analysis in Microbial Ecology</a></li>
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<h3>Downloads</h3>
<h4>Tutorial text and Solutions to exercises</h4>
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<li><a href="docs/Rnotes_communityEcol.pdf" class="icon fa-file-pdf-o"> Tutorial text "Ecological Analysis of Communities". </a></li>
<li><a href="docs/00_SolutionsExercises_communityEcol.pdf" class="icon fa-file-pdf-o"> Solutions to exercises.</a></li>
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<h4>Datasets</h4>
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<li><a href="https://www.westernsydney.edu.au/__data/assets/text_file/0003/917274/tibplat.csv" class="icon fa-file-text-o"> Tibetan plateau plant communities (tibplat.csv)</a></li>
<li><a href="https://www.westernsydney.edu.au/__data/assets/text_file/0010/917245/HFEIFplotmeans.csv" class="icon fa-file-text-o"> HFE Tree growth, plot averages (HFEplotmeans.csv) </a></li>
<li><a href="https://www.westernsydney.edu.au/__data/assets/text_file/0005/917204/Allometry.csv" class="icon fa-file-text-o"> Allometry data for three tree species (Allometry.csv)</a></li>
<li><a href="https://www.westernsydney.edu.au/__data/assets/text_file/0006/917223/endophytes.csv" class="icon fa-file-text-o"> OTU table for fungal endophytes (endophytes.csv)</a></li>
<li><a href="https://www.westernsydney.edu.au/__data/assets/text_file/0011/917228/endophytes_env.csv" class="icon fa-file-text-o"> Environmental data for fungal endophyte samples (endophytes_env.csv)</a></li>
<li><a href="https://www.westernsydney.edu.au/__data/assets/text_file/0008/917225/endophytes_dist.csv" class="icon fa-file-text-o"> Geographic coordinates for fungal endophyte samples (endophytes_dist.csv)</a></li>
<li><a href="http://www.hiercourse.com/docs/IxFsub.csv" class="icon fa-file-text-o"> Some fungal community data from the irrigation by fertilisation experiment at HIE (IxFsub.csv)</a></li>
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