Workflow for Sex Differences Analyses in the Developing Human Brain

• This workflow consists of a Snakemake workflow that can be executed using the supplied bash scripts:

  bash snakemake.sh

• Software used:

  • bedtools v2.26.0
  • DESeq2 v1.20.0
  • kallisto v0.43.0
  • pandas v0.21.0
  • PEER v1.3
  • SARTools v1.3.2
  • tidyverse v1.1.1

• Genome References:

  • genome sequence (GRCh38.p4 with Decoy sequences)
  • annotation (derived from Gencode version 23 (GRCh38.p3))