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Matt Holt edited this page Apr 7, 2016
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Welcome to the msbwt wiki!
- A MSBWT Primer - a high-level overview of what a MSBWT is and why it is useful in bioinformatics
- Installation of msbwt - an overview of the basic steps for installing the msbwt command line interface and Python API
- Constructing the MSBWT - an overview of the command line instructions for building a MSBWT through the msbwt package
- Queries with the Command Line Interface - an overview of the two main methods for retrieving k-mer frequencies using the command line
- Queries with the Python API - an overview of the basic Python commands for MSBWT queries
- Converting to msbwt's RLE format - an overview of converting externally generated MSBWTs to our RLE format
Holt, J., & McMillan, L. (2014). Merging of multi-string BWTs with applications. Bioinformatics, btu584.
Holt, J., & McMillan, L. (2014, September). Constructing burrows-wheeler transforms of large string collections via merging. In Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (pp. 464-471). ACM.
James Holt - holtjma@cs.unc.edu