Guide to transcriptome assembly & analysis
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Guide to Population Genomics via RNA-Seq

This is a guide to transcriptome assembly and analysis used in the Palumbi Lab at Hopkins Marine Station, Stanford University.

See [Palumbi Lab's Simple Fool's Guide to Population Genomics] ( for helpful background information. Warning: scripts referred to in the SFG manual are outdated and difficult to use.

Refer to to follow our pipeline. This doc is currently in progress and being updated regularly.

Our scripts are updated more regularly in this repoistory: