This is a guide to transcriptome assembly and analysis used in the Palumbi Lab at Hopkins Marine Station, Stanford University.
See [Palumbi Lab's Simple Fool's Guide to Population Genomics] (http://sfg.stanford.edu) for helpful background information. Warning: scripts referred to in the SFG manual are outdated and difficult to use.
Refer to guide_to_scripts.md to follow our pipeline. This doc is currently in progress and being updated regularly.
Our scripts are updated more regularly in this repoistory: https://github.com/bethsheets/palumbi_scripts