add cre boolean to cassette table

htgt · Dec 7, 2012 · 7d45de3 · 7d45de3
1 parent 6e2cecf
commit 7d45de3
Show file tree

Hide file tree

Showing 5 changed files with 22 additions and 3 deletions.
diff --git a/ddl/templates/versions/17/audit-up.sql b/ddl/templates/versions/17/audit-up.sql
@@ -0,0 +1 @@
+ALTER TABLE audit.cassettes ADD COLUMN cre boolean;
diff --git a/ddl/templates/versions/17/fixtures.sql b/ddl/templates/versions/17/fixtures.sql
@@ -0,0 +1,2 @@
+INSERT INTO schema_versions(version)
+VALUES (17);
diff --git a/ddl/templates/versions/17/up.sql b/ddl/templates/versions/17/up.sql
@@ -0,0 +1,2 @@
+ALTER TABLE cassettes ADD COLUMN cre BOOLEAN NOT NULL DEFAULT false;
+
diff --git a/lib/LIMS2/CassetteFunction.pm b/lib/LIMS2/CassetteFunction.pm
@@ -18,7 +18,7 @@ Readonly my $CASSETTE_FUNCTION_CHECKS => {
     reporter_only              => [ \&has_conditional_cassette, \&has_cre_recombinase ],
     reporter_only_promoter     => [ \&has_conditional_cassette, \&has_promoter_cassette, \&has_cre_recombinase ],
     reporter_only_promoterless => [ \&has_conditional_cassette, \&has_promoterless_cassette, \&has_cre_recombinase ],
-    cre_knock_in               => [ \&has_cre_recombinase ]
+    cre_knock_in               => [ \&has_cre_cassette ]
 };
 
 sub satisfies_cassette_function {
@@ -48,6 +48,12 @@ sub has_promoterless_cassette {
     return ! has_promoter_cassette($well);
 }
 
+sub has_cre_cassette {
+    my $well = shift;
+
+    return $well->cassette->cre;
+}
+
 sub has_cre_recombinase {
     my $well = shift;
 

diff --git a/lib/LIMS2/Model/Schema/Result/Cassette.pm b/lib/LIMS2/Model/Schema/Result/Cassette.pm
@@ -77,6 +77,12 @@ __PACKAGE__->table("cassettes");
   default_value: false
   is_nullable: 0
 
+=head2 cre
+
+  data_type: 'boolean'
+  default_value: false
+  is_nullable: 0
+
 =cut
 
 __PACKAGE__->add_columns(
@@ -99,6 +105,8 @@ __PACKAGE__->add_columns(
   { data_type => "integer", is_nullable => 1 },
   "conditional",
   { data_type => "boolean", default_value => \"false", is_nullable => 0 },
+  "cre",
+  { data_type => "boolean", default_value => \"false", is_nullable => 0 },
 );
 
 =head1 PRIMARY KEY
@@ -160,8 +168,8 @@ __PACKAGE__->has_many(
 );
 
 
-# Created by DBIx::Class::Schema::Loader v0.07022 @ 2012-12-03 17:06:37
-# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:fcVntXyx91OdbxSzjTKzQg
+# Created by DBIx::Class::Schema::Loader v0.07022 @ 2012-12-07 12:55:50
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:z73XIdwVTI4m7e5PXZB4uw
 
 
 # You can replace this text with custom code or comments, and it will be preserved on regeneration